A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

C

c1 - Variable in class org.simBio.bio.faber_rudy_2000.current.INaCa

c1 - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.RateConstant

C1 - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.Iha

c2 - Variable in class org.simBio.bio.faber_rudy_2000.current.INaCa

c2 - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.RateConstant

c2 - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ComplexIV

cytochrome c2+ (reduced) concentration

C2 - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.Iha

c3 - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.RateConstant

c4 - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.RateConstant

c5 - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.RateConstant

c6 - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.RateConstant

c7 - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.RateConstant

Ca - Variable in class org.simBio.bio.faber_rudy_2000.current.ICaL

Ca - Variable in class org.simBio.bio.faber_rudy_2000.structure.NSR

Ca - Variable in class org.simBio.bio.himeno_et_al_2008.IKs

intracellular Ca²⁺ concentration

Ca - Variable in class org.simBio.bio.kurata_et_al_2005.molecule.CaBuffer_RK

free Ca concentration (mM)

Ca - Variable in class org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponin

Ca - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.IKs

intracellular Ca²⁺ concentration

Ca - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.potassium.IKs

intracellular Ca2+ concentration

Ca - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.Analytic

Ca - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.Analytic_RK

free calcium concentration (mM)

Ca - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.InstantCaBuffer

Ca - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.ODE

free Ca²⁺ concentration (mM)

Ca - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL

Ca - Variable in class org.simBio.bio.negroni_lascano_1996.exp.Model

Ca - Variable in class org.simBio.bio.negroni_lascano_1996.Qpump

Ca - Variable in class org.simBio.bio.negroni_lascano_1996.Qrel

Ca - Variable in class org.simBio.bio.negroni_lascano_1996.Troponin

Ca - Variable in class org.simBio.bio.takeuchi_et_al_2006.function.Electroneutrality

concentration of intracellular Ca²⁺ [mM]

Ca - Variable in class org.simBio.bio.terashima_et_al_2006.current.potassium.IKs

intracellular Ca²⁺ concentration

CaBuffer - Class in org.simBio.bio.faber_rudy_2000.molecule

analytic equation of Calcium buffering.

CaBuffer() - Constructor for class org.simBio.bio.faber_rudy_2000.molecule.CaBuffer

CaBuffer_RK - Class in org.simBio.bio.kurata_et_al_2005.molecule

Calculate using ordinary differential equation, working with analytic buffer.

CaBuffer_RK() - Constructor for class org.simBio.bio.kurata_et_al_2005.molecule.CaBuffer_RK

CaCalmod - Variable in class org.simBio.bio.noble_et_al_1998.Model

CaCaM - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.IPMCA

CachedBuffer - Class in org.simBio.sim.analyzer.graph.results

キャッシュ機能付きの、時系列データバッファ.

CachedBuffer(File) - Constructor for class org.simBio.sim.analyzer.graph.results.CachedBuffer

CaDiadic - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL

local Ca²⁺ concentration near the mouth of L-type Ca channel (mM)

CaDiadic - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL

local Ca²⁺ concentration near the mouth of L-type Ca channel (mM)

CaDiadic - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.IRyR

local Ca²⁺ concentration near the mouth of RyR channel.

CaDiadic - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaL

local Ca2+ concentration near the mouth of L-type Ca channel (mM)

CaDiadic - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.channel.IRyR

local Ca2+ concentration near the mouth of RyR channel

CaDiadic - Variable in class org.simBio.bio.sarai_et_al_2006.current.cf.ICaL

local Ca2+ concentration near the mouth of L-type Ca channel (mM)

CaDiadic - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.ICaL

local Ca²⁺ concentration near the mouth of L-type Ca channel (mM)

CaDiadic - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.IRyR

local Ca2+ concentration near the mouth of RyR channel

CaDiadic - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ICaL

local Ca²⁺ concentration near the mouth of L-type Ca channel (mM)

Cads - Variable in class org.simBio.bio.noble_et_al_1998.Model

Caext - Variable in class org.simBio.bio.terashima_et_al_2006.complex.WaterFlux

concentration of extracellular Ca²⁺ [mM]

Caext - Variable in class org.simBio.bio.terashima_et_al_2006.experiment.TonicityChange

concentration of extracellular Ca2+ [mM]

Caext - Variable in class org.simBio.bio.terashima_et_al_2006.function.Tonicity

concentration of extracellular Ca2+ [mM]

CaFigure - Class in org.simBio.bio.sarai_et_al_2006.figure

Utility class to set figure parameters.

CaFigure() - Constructor for class org.simBio.bio.sarai_et_al_2006.figure.CaFigure

Cafree - Variable in class org.simBio.bio.faber_rudy_2000.molecule.CaBuffer

Cafree - Variable in class org.simBio.bio.faber_rudy_2000.molecule.DualCaBuffer

Cai - Variable in class org.simBio.bio.faber_rudy_2000.current.ICaL

Cai - Variable in class org.simBio.bio.faber_rudy_2000.current.IKs

Cai - Variable in class org.simBio.bio.faber_rudy_2000.current.INaCa

Cai - Variable in class org.simBio.bio.faber_rudy_2000.current.IpCa

Cai - Variable in class org.simBio.bio.faber_rudy_2000.current.RyR

Cai - Variable in class org.simBio.bio.faber_rudy_2000.current.SRCA

Cai - Variable in class org.simBio.bio.faber_rudy_2000.structure.JSR

Cai - Variable in class org.simBio.bio.faber_rudy_2000.structure.NSR

Cai - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL

intracellular Ca²⁺ concentration (mM)

Cai - Variable in class org.simBio.bio.himeno_et_al_2008.Ist

intracellular calcium concentration (mM)

Cai - Variable in class org.simBio.bio.kurata_et_al_2005.complex.SR

Cai - Variable in class org.simBio.bio.kurata_et_al_2005.current.ICab

Cai - Variable in class org.simBio.bio.kurata_et_al_2005.current.ICaL

Cai - Variable in class org.simBio.bio.kurata_et_al_2005.current.INaCa

Cai - Variable in class org.simBio.bio.kurata_et_al_2005.current.IpCa

Cai - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Leak

[Ca]_i (mM)

Cai - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Release

Cai - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Uptake

[Ca²⁺]_i (mM)

Cai - Variable in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.INaCa

concentration of intracellular Calcium[mM]

Cai - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.ICaPump

Ca2+ concentration in cytoplasm (mM)

Cai - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.IPMCA

Ca²⁺ concentration in cytoplasm (mM)

Cai - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL

intracellular Ca²⁺ concentration (mM)

Cai - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.IRyR

intracellular calcium concentration (mM)

Cai - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.ICaPump

Ca2+ concentration in cytoplasm (mM)

Cai - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaCa

concentration of intracellular Calcium[mM]

Cai - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaL

intracellular calcium concentration (mM)

Cai - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ILCCa

intracellular calcium concentration (mM)

Cai - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.Ist

intracellular calcium concentration (mM)

Cai - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.channel.IRyR

intracellular calcium concentration (mM)

Cai - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.Diffusion

concentration of intracellular Ca2+ [mM]

Cai - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL

Cai - Variable in class org.simBio.bio.noble_et_al_1998.Model

Cai - Variable in class org.simBio.bio.sarai_et_al_2006.current.carrier.IPMCA

Ca²⁺ concentration in cytoplasm (mM)

Cai - Variable in class org.simBio.bio.sarai_et_al_2006.current.cf.ICaL

intracellular calcium concentration (mM)

Cai - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.ICaL

intracellular Ca²⁺ concentration (mM)

Cai - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.INaCa

concentration of intracellular Ca²⁺ [mM]

Cai - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.IRyR

intracellular calcium concentration (mM)

Cai - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.PMCA

concentration of intracellular Ca²⁺ [mM]

Cai - Variable in class org.simBio.bio.tenTusscher_et_al_2004.complex.SR

Cai - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.carrier.INaCa

Cai - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.ICa

Cai - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IpCa

Cai - Variable in class org.simBio.bio.tenTusscher_et_al_2004.flux.Leak

Cai - Variable in class org.simBio.bio.tenTusscher_et_al_2004.flux.Release

Cai - Variable in class org.simBio.bio.tenTusscher_et_al_2004.flux.UpTake

Cai - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ICaL

intracellular Ca²⁺ concentration (mM)

Cai - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ILCCa

intracellular calcium concentration (mM)

Cai - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.Ist

Cai - Variable in class org.simBio.bio.terashima_et_al_2006.current.Diffusion

concentration of intracellular Ca2+ [mM]

Cainitial - Variable in class org.simBio.bio.terashima_et_al_2006.experiment.TonicityChange

concentration of initial extracellular Ca2+ [mM]

Caint - Variable in class org.simBio.bio.terashima_et_al_2006.complex.WaterFlux

concentration of intracellular Ca²⁺ [mM]

Caj - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Transfer

[Ca²⁺]_rel (mM)

calcCurrent(double) - Method in class org.simBio.sim.analyzer.measure.LeadPotential

calculate(double) - Method in class org.simBio.bio.Compartment

calculate(double) - Method in class org.simBio.bio.cor.Hodgkin_huxley_squid_axon_1952_modified

Computation.

calculate(double) - Method in class org.simBio.bio.cor.Vanderpol_model_1928

Computation.

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.current.Current

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.current.ICaL

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.current.ICaT

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.current.IK1

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.current.IKpl

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.current.IKr

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.current.IKs

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.current.INa

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.current.INaCa

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.current.INaK

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.current.IpCa

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.current.NSRLeak

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.current.RyR

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.current.SRCA

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.function.Diffusion

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.function.Stimulus

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.molecule.CaBuffer

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.molecule.DualCaBuffer

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.structure.Cell

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.structure.JSR

calculate(double) - Method in class org.simBio.bio.faber_rudy_2000.structure.NSR

calculate(double) - Method in class org.simBio.bio.function.Analytic2state

calculate(double) - Method in class org.simBio.bio.function.StepChanger

calculate(double) - Method in class org.simBio.bio.henriquez_et_al_2001.GapJunction

calculate the unitary gap junction conductance (pS) which depends on transjunctional voltage

calculate(double) - Method in class org.simBio.bio.himeno_et_al_2008.ICaL

calculate(double) - Method in class org.simBio.bio.himeno_et_al_2008.Iha

calculate(double) - Method in class org.simBio.bio.himeno_et_al_2008.IKACh

calculate(double) - Method in class org.simBio.bio.himeno_et_al_2008.IKs

calculate(double) - Method in class org.simBio.bio.himeno_et_al_2008.Ist

calculate(double) - Method in class org.simBio.bio.hodgkin_huxley_1952.I_K

calculate(double) - Method in class org.simBio.bio.hodgkin_huxley_1952.I_L

calculate(double) - Method in class org.simBio.bio.hodgkin_huxley_1952.I_Na

calculate(double) - Method in class org.simBio.bio.hodgkin_huxley_1952.I_stim

apply stimulus current.

calculate(double) - Method in class org.simBio.bio.hodgkin_huxley_1952.Membrane

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.complex.SR

convert current (pA) to d[X]/dt (mM)

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.current.ICab

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.current.ICaL

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.current.IK1

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.current.IKr

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.current.IKs

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.current.INa

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.current.INab

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.current.INaCa

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.current.INaK

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.current.IpCa

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.current.Ito

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.flux.Leak

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.flux.Release

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.flux.Transfer

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.flux.Uptake

calculate(double) - Method in class org.simBio.bio.kurata_et_al_2005.molecule.CaBuffer_RK

calculate(double) - Method in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.Carrier

calculate total charge movement using reduced 2 state model
2 state gateを用いて電流を計算する

calculate(double) - Method in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.INaCa

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.contraction.CrossBridgeLength

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.contraction.IsotonicContraction

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponin

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponinmit

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.ICaPump

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.INaK

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.IPMCA

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICFTR

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.IKs

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.current.IK1

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.current.IRyR

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.function.Average

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.function.ConcentrationAMP

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.function.KoDependency_IK1

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.function.PA2MS

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.molecule.BetaAR_Gs

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.molecule.CAMP

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PKA

calculate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.Compartment

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.complex.ATPsynthesis

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier

calculate total charge movement using reduced 2 state model
2 state gateを用いて電流を計算する

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.ICaPump

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaCa

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaK

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.cf.CfChannel

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaL

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaT

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.cf.Iha

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.cf.IKpl

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ILCCa

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.cf.INa

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.cf.Ist

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.cf.Ito

calculate transient outward current at time t

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.channel.IRyR

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.Diffusion

current = permeability * concentration gradient (in - out)

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

add current to Compartment.

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.pipette.CurrentClamp

apply stimulus pulsatile current

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.pipette.VoltageClamp

to keep Vm constant, Iext is applied.

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.potassium.IK1

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.potassium.IKACh

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.potassium.IKATP

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.potassium.IKr

Calculate current

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.potassium.IKs

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.current.potassium.PureKchannel

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.function.Charge

dVm/dt = - I / Cm

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.function.ConstantField

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.function.Current

convert current (pA) to d[X]/dt (mM)

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.function.Diffusion

dy/dt = (inf - y)/ tau

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.function.Diffusion_a

y = inf -(inf - y_old) * exp(-t/tau)

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.function.Diffusion_t

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.function.KoDependency

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.function.RateConstant

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.function.RateConstantK

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.function.RateConstantVm

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.function.ReversalPotential

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.function.Volume

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.Analytic

instantaneous equiribrium

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.Analytic_RK

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.InstantCaBuffer

instantaneous equiribrium is iteratively calculated.

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.ODE

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL_RK

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme.CrossBridgeNL

calculate the rate of change in the cross bridge length, dX/dt

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme.IsometricContraction

calculate the tension without contraction (isometric contraction)

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme.IsotonicContraction

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.current.carrier.ICaPump

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.current.carrier.INaK

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.exp.Anoxia

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.Acidity

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.chemical.CN

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.chemical.FCCP

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationAMP

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationCyta2

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationPi

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.GradientP

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.GradientpH

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.MassConservation

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.MassConservation2

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.MembranePotential

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.MetalFreeConcentration

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.PartialPotential

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.PressureToConcentration

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.RedoxPotential

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.RedoxPotentialCyta

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.VolumeRatio

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.function.Zvalue

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.molecule.buffer.Ca.TroponinNL_RK

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.molecule.buffer.HBuffering

calculate and set the value of r_buffer.

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.molecule.Diffusion

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.molecule.enzyme.AK

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.molecule.enzyme.CK

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ATPsynthase

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ComplexI

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ComplexIII

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ComplexIV

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.OxidativePhosphorylation

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.molecule.SubstrateDehydrogenation

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter.ANT

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter.PhosphateCarrier

calculate(double) - Method in class org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter.ProtonLeak

calculate(double) - Method in class org.simBio.bio.negroni_lascano_1996.CrossBridge

calculate(double) - Method in class org.simBio.bio.negroni_lascano_1996.exp.IsotonicContraction

set force equilibrated length.

calculate(double) - Method in class org.simBio.bio.negroni_lascano_1996.exp.LChange

calculate(double) - Method in class org.simBio.bio.negroni_lascano_1996.exp.Model

calculate(double) - Method in class org.simBio.bio.negroni_lascano_1996.Qpump

Qpump=Kp/(1+(Km/[Ca2+])^2)

calculate(double) - Method in class org.simBio.bio.negroni_lascano_1996.Qrel

calculate(double) - Method in class org.simBio.bio.negroni_lascano_1996.Troponin

calculate(double) - Method in class org.simBio.bio.noble_et_al_1998.Model

calculate(double) - Method in class org.simBio.bio.oka_et_al_2006.function.JunctionalConductance

Calculate the junctional conductance (nS) using by Gj=N*gj*pOpen.

calculate(double) - Method in class org.simBio.bio.oka_et_al_2006.function.JunctionalPotential

calculate(double) - Method in class org.simBio.bio.oka_et_al_2006.function.kinetics.IndependentGate

Calculate the open probability.

calculate(double) - Method in class org.simBio.bio.oka_et_al_2006.function.kinetics.MultiStateModel

calculate(double) - Method in class org.simBio.bio.oka_et_al_2006.function.kinetics.RateConstantCaGate

Nothing performed

calculate(double) - Method in class org.simBio.bio.oka_et_al_2006.function.kinetics.TwoStateModel

Calculate the open probability

calculate(double) - Method in class org.simBio.bio.oka_et_al_2006.structure.GapJunction

Calculate the gap junctional current (pA)

calculate(double) - Method in class org.simBio.bio.oka_et_al_2006.structure.GapJunctionK

calculate(double) - Method in class org.simBio.bio.parabola

calculate(double) - Method in class org.simBio.bio.sarai_et_al_2003.VoltageClamp

SA nodeモデルでVmが設定値になったらVoltage Clampを開始する。

calculate(double) - Method in class org.simBio.bio.sarai_et_al_2006.current.carrier.IPMCA

calculate(double) - Method in class org.simBio.bio.sarai_et_al_2006.current.cf.ICaL

calculate(double) - Method in class org.simBio.bio.sarai_et_al_2006.function.Rate

calculate(double) - Method in class org.simBio.bio.sarai_et_al_2006.function.Ratio

calculate(double) - Method in class org.simBio.bio.sarai_noma_2004.fourState.MonteCarlo

calculate single channels' state transition

calculate(double) - Method in class org.simBio.bio.sarai_noma_2004.fourState.NaChannel

calculate state probability by ODE.

calculate(double) - Method in class org.simBio.bio.sarai_noma_2004.fourState.ODE

calculate state probability by ODE.

calculate(double) - Method in class org.simBio.bio.sarai_noma_2004.structure.GapJunction

calculate(double) - Method in class org.simBio.bio.sarai_noma_2004.VoltageClamp

apply square voltage pulse

calculate(double) - Method in class org.simBio.bio.takeuchi_et_al_2006.current.CfChannel

calculate(double) - Method in class org.simBio.bio.takeuchi_et_al_2006.current.ICaL

calculate(double) - Method in class org.simBio.bio.takeuchi_et_al_2006.current.INaCa

calculate(double) - Method in class org.simBio.bio.takeuchi_et_al_2006.current.IRyR

calculate(double) - Method in class org.simBio.bio.takeuchi_et_al_2006.current.PMCA

calculate(double) - Method in class org.simBio.bio.takeuchi_et_al_2006.function.Electroneutrality

calculate(double) - Method in class org.simBio.bio.takeuchi_et_al_2006.function.ENaCa

calculate(double) - Method in class org.simBio.bio.takeuchi_et_al_2006.function.Ouabain

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.complex.SR

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.current.carrier.Carrier

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.current.carrier.INaCa

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.current.carrier.INaK

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.current.IbCa

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.current.IbNa

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.current.ICa

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.current.IK1

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.current.IKr

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.current.IKs

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.current.INa

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.current.IpCa

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.current.IpK

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.current.Ito

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.current.Ito_endo

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.current.pipette.CurrentClamp

apply stimulus pulsatile current

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.flux.Leak

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.flux.Release

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.flux.UpTake

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.function.Charge

dVm/dt = - I / Cm

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.function.Current

convert current (pA) to d[X]/dt (mM)

calculate(double) - Method in class org.simBio.bio.tenTusscher_et_al_2004.function.ReversalPotential2

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.complex.WaterFlux

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.carrier.NKCC

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.ICaL

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.ICaT

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.ICFTR

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.IClb

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.Iha

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.IKpl

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.ILCCa

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.INa

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.INab

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.Ist

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.Ito

calculate transient outward current at time t

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.IVRCC

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.Diffusion

current = permeability * concentration gradient (in - out)

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.MembraneTransporter

add Cl current to Compartment.

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.potassium.IK1

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.potassium.IKATP

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.potassium.IKr

Calculate current

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.potassium.IKs

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.current.potassium.PureKchannel

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.experiment.StepChanger

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.experiment.StepChanger2

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.experiment.TonicityChange

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.experiment.VolumeRatio

calculate value = Vt ratio.

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.function.AmplitudeNaK

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.function.KoDependency

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.function.KoDependency2

!! INSTRUCTION !! "amplitude * ([K]o / constant)^power" is the single channel conductance.

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.function.Tonicity

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.function.TotalVolume

calculate value = Vt.

calculate(double) - Method in class org.simBio.bio.terashima_et_al_2006.function.Volume

calculate(double) - Method in class org.simBio.core.Conductor

call calculate(double t) of the every Reactor.

calculate(double) - Method in class org.simBio.core.Reactor

write equations here, and calculate dy over dt.

calculate(double) - Method in class org.simBio.core.ReactorList

clear value of All Reactors, and call calculate() of All Reactors
IResetBeforeCalcをimplimentsしているクラスの値をゼロにリセットした後、 全てのReactorのcalculate()を呼び出す。

calculate() - Method in class org.simBio.util.numerical.MathFunction

The object's own value should be setted in this method.

calculated() - Method in class org.simBio.sim.js.Worker

call back Method from Processor.

CalculationObserver - Interface in org.simBio.core

Conductor が計算を開始・終了した時に、監視オブジェクトに通知を行います。

CaLvsPMCAwoNCX - Class in org.simBio.bio.sarai_et_al_2006.figure

Make Fig.

CaLvsPMCAwoNCX() - Constructor for class org.simBio.bio.sarai_et_al_2006.figure.CaLvsPMCAwoNCX

cAMP - Variable in class org.simBio.bio.himeno_et_al_2008.Iha

cAMP concentration

cAMP - Variable in class org.simBio.bio.kuzumoto_et_al_2007.function.ConcentrationAMP

CAMP - Class in org.simBio.bio.kuzumoto_et_al_2007.molecule

cAMP module.

CAMP() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.molecule.CAMP

cAMP - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.CAMP

Phosphodiesterase concentration (mM)

cAMP - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PKA

cAMP concentration (mM)

cAMP - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ICFTR

concentration of intracellular cAMP [mM]

cAMP0 - Variable in class org.simBio.bio.himeno_et_al_2008.Iha

cAMP_Vshift - Variable in class org.simBio.bio.himeno_et_al_2008.Iha

cAMPtot - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.CAMP

total cAMP concentration (mM)

cAMPtot - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PKA

total cAMP concentration (mM)

Can - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Transfer

[Ca²⁺]_up (mM)

cancelCellEditing() - Method in class org.simBio.sim.gui.CheckedJTree.CheckedJTreeCellRenderer

Canceled - Class in org.simBio.sim.js.entry

Canceled

Canceled(WorkerId, String, String, Throwable) - Constructor for class org.simBio.sim.js.entry.Canceled

Canceled(String) - Constructor for class org.simBio.sim.js.entry.Canceled

Canceled() - Constructor for class org.simBio.sim.js.entry.Canceled

canImport(JComponent, DataFlavor[]) - Method in class org.simBio.sim.gui.toolKit.dndmenu.DnDTransferHandler

ドロップ用: TransferableActionがドラッグされようとしてきた場合のみ、true を返す

Cao - Variable in class org.simBio.bio.faber_rudy_2000.current.ICaL

Cao - Variable in class org.simBio.bio.faber_rudy_2000.current.INaCa

Cao - Variable in class org.simBio.bio.kurata_et_al_2005.current.ICab

Cao - Variable in class org.simBio.bio.kurata_et_al_2005.current.INaCa

Cao - Variable in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.INaCa

concentration of intracellular Calcium[mM]

Cao - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.ICaPump

Ca2+ concentration in SR (mM, uptake site compartment)

Cao - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.IPMCA

Ca²⁺ concentration in external solution (mM)

Cao - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.IRyR

calcium concentration in SR release site (mM)

Cao - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.ICaPump

Ca2+ concentration in SR (mM, uptake site compartment)

Cao - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaCa

concentration of intracellular Calcium[mM]

Cao - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.channel.IRyR

extracellular calcium concentration (mM)

Cao - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.Diffusion

concentration of extracellular Ca2+ [mM]

Cao - Variable in class org.simBio.bio.sarai_et_al_2006.current.carrier.IPMCA

Ca²⁺ concentration in external solution (mM)

Cao - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.INaCa

concentration of extracellular Ca²⁺ [mM]

Cao - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.carrier.INaCa

Cao - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.ICa

Cao - Variable in class org.simBio.bio.terashima_et_al_2006.current.Diffusion

concentration of extracellular Ca2+ [mM]

Carel - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Release

Carel - Variable in class org.simBio.bio.noble_et_al_1998.Model

Carel - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.IRyR

calcium concentration in SR rel (mM)

CarelTotal - Variable in class org.simBio.bio.kurata_et_al_2005.complex.SR

CaRest - Variable in class org.simBio.bio.negroni_lascano_1996.Qrel

Carrier - Class in org.simBio.bio.kuratomi_et_al_2003.current.carrier

Abstract class for ping-pong model of the carrier.

Carrier() - Constructor for class org.simBio.bio.kuratomi_et_al_2003.current.carrier.Carrier

Carrier - Class in org.simBio.bio.matsuoka_et_al_2003.current.carrier

Abstract class for ping-pong model of the carrier.

Carrier() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier

Carrier - Class in org.simBio.bio.tenTusscher_et_al_2004.current.carrier

abstract of ion carrier

Carrier() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.carrier.Carrier

Casr - Variable in class org.simBio.bio.faber_rudy_2000.current.NSRLeak

Casr - Variable in class org.simBio.bio.faber_rudy_2000.current.RyR

Casr - Variable in class org.simBio.bio.tenTusscher_et_al_2004.flux.Leak

Casr - Variable in class org.simBio.bio.tenTusscher_et_al_2004.flux.Release

Catotal - Variable in class org.simBio.bio.faber_rudy_2000.molecule.CaBuffer

Catotal - Variable in class org.simBio.bio.faber_rudy_2000.molecule.DualCaBuffer

CaTotal - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

CaTotal - Variable in class org.simBio.bio.faber_rudy_2000.structure.JSR

CaTotal - Variable in class org.simBio.bio.kurata_et_al_2005.molecule.CaBuffer_RK

total Ca concentration (mM)

CaTotal - Variable in class org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponin

CaTotal - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.Analytic_RK

total calcium concentration (free calcium + buffered calcium + influx/efflux calcium) (mM)

CaTotal - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL_RK

total Ca concentration

CaTotal - Variable in class org.simBio.bio.tenTusscher_et_al_2004.complex.SR

CaTrop - Variable in class org.simBio.bio.noble_et_al_1998.Model

Caup - Variable in class org.simBio.bio.kurata_et_al_2005.complex.SR

Caup - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Leak

[Ca]_up (mM)

Caup - Variable in class org.simBio.bio.noble_et_al_1998.Model

cause - Variable in class org.simBio.sim.js.entry.Canceled

cbuffer - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.buffer.HBuffering

Buffering capacity for H⁺ (c_buffer).

cCa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

CCa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

to see Ca current component

CCa - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

cCl - Variable in class org.simBio.bio.terashima_et_al_2006.current.MembraneTransporter

Cl component (pA)

CCl - Variable in class org.simBio.bio.terashima_et_al_2006.current.MembraneTransporter

to see Cl current component

CCl - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

Cell - Class in org.simBio.bio.faber_rudy_2000.structure

Cell.

Cell() - Constructor for class org.simBio.bio.faber_rudy_2000.structure.Cell

CfChannel - Class in org.simBio.bio.matsuoka_et_al_2003.current.cf

calculate current component of Na, K, Ca ion according to the constant field theory.

CfChannel() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.cf.CfChannel

CfChannel - Class in org.simBio.bio.takeuchi_et_al_2006.current

calculate current component of Na, K, Ca, and Cl ion according to the constant field theory.

CfChannel() - Constructor for class org.simBio.bio.takeuchi_et_al_2006.current.CfChannel

CfChannel - Class in org.simBio.bio.terashima_et_al_2006.current.cf

calculate current component of Na, K, Ca, and Cl ion according to the constant field theory.

CfChannel() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel

change() - Method in class org.simBio.sim.dm.ParameterChanger

changeScale() - Method in class org.simBio.sim.analyzer.graph.AbstractGraph

Carries out the necessary preparation for redrawing, when the display position/display range has changed. Currently it calls the Viewer method of the same name.

changeScale() - Method in class org.simBio.sim.analyzer.graph.Graph

Makes the necessary preparations for redrawing, when the display position / display range has changed

changeScale() - Method in class org.simBio.sim.analyzer.graph.Viewer

Carries out the necessary preparation for redrawing, when the display position/display area changes. Currently it entrusts the operation to repaint().

Channel - Class in org.simBio.bio.matsuoka_et_al_2003.current.channel

template of Channel.

Channel() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.channel.Channel

Channel - Class in org.simBio.sim.js

Channel

Channel() - Constructor for class org.simBio.sim.js.Channel

channel - Variable in class org.simBio.sim.js.entry.Index

channelName - Variable in class org.simBio.sim.js.entry.Request

recipient que of the request

characters(char[], int, int) - Method in class org.simBio.serialize.xml.LogSax2

Logs character data when debugging.

characters(char[], int, int) - Method in class org.simBio.sim.ps.serialize.TocReader

Charge - Class in org.simBio.bio.matsuoka_et_al_2003.function

keep whole cell current from external solution.

Charge() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.function.Charge

Charge - Class in org.simBio.bio.tenTusscher_et_al_2004.function

keep whole cell current from external solution.

Charge() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.function.Charge

CheckedJTree - Class in org.simBio.sim.gui

チェックボックスによる選択機能を持ったJTree.

CheckedJTree(TreeModel) - Constructor for class org.simBio.sim.gui.CheckedJTree

CheckedJTree.CheckedJTreeCellRenderer - Class in org.simBio.sim.gui

チェック付きのTreeCellRenderer/TreeCellEditor.

CheckedJTree.CheckedJTreeCellRenderer() - Constructor for class org.simBio.sim.gui.CheckedJTree.CheckedJTreeCellRenderer

コンストラクタ.

CheckedJTree.CheckedJTreeCellRenderer(LayoutManager, boolean) - Constructor for class org.simBio.sim.gui.CheckedJTree.CheckedJTreeCellRenderer

Deprecated.

CheckedJTreeModel - Interface in org.simBio.sim.gui

CheckedJTree用の TreeModel.

checkException() - Method in class org.simBio.core.Conductor

Check if this thread has thrown an exception.

childExchanger_ - Variable in class org.simBio.sim.dm.exchange.Exchanger

CICRfactor - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.IRyR

cK - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

CK - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

to see K current component

CK - Class in org.simBio.bio.matsuoka_et_al_2004.molecule.enzyme

Creatine Kinase (CK) System.

CK() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.molecule.enzyme.CK

CK - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

Cl - Variable in class org.simBio.bio.takeuchi_et_al_2006.function.Electroneutrality

concentration of intracellular Cl^- [mM]

CLASS_NAME - Static variable in class org.simBio.core.Initializer

attribute name of the class

clear() - Method in class org.simBio.core.Initializer

clear all attributes.

clear() - Method in class org.simBio.sim.analyzer.graph.results.CachedBuffer

バッファの内容をクリアする.

Clext - Variable in class org.simBio.bio.terashima_et_al_2006.complex.WaterFlux

concentration of extracellular Cl^- [mM]

Clext - Variable in class org.simBio.bio.terashima_et_al_2006.experiment.TonicityChange

concentration of extracellular Cl- [mM]

Clext - Variable in class org.simBio.bio.terashima_et_al_2006.function.Tonicity

concentration of extracellular Cl- [mM]

ClFlux - Variable in class org.simBio.bio.terashima_et_al_2006.current.carrier.NKCC

Cl- current carried by NKCC1 [pA]

Cli - Variable in class org.simBio.bio.terashima_et_al_2006.current.carrier.NKCC

concentration of intracellular Cl^- [mM]

Cli - Variable in class org.simBio.bio.terashima_et_al_2006.current.Diffusion

concentration of intracellular Cl- [mM]

client - Variable in class org.simBio.sim.js.entry.Canceled

client - Variable in class org.simBio.sim.js.entry.Processing

client - Variable in class org.simBio.sim.js.entry.Receipt

client - Variable in class org.simBio.sim.js.entry.Request

who sent the request

client - Variable in class org.simBio.sim.js.entry.Result

Clinitial - Variable in class org.simBio.bio.terashima_et_al_2006.experiment.TonicityChange

concentration of initial extracellular Cl- [mM]

Clint - Variable in class org.simBio.bio.terashima_et_al_2006.complex.WaterFlux

concentration of intracellular Cl^- [mM]

ClKratio - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.IClb

ratio of Cl- conductance to K+ conductance

Clo - Variable in class org.simBio.bio.terashima_et_al_2006.current.carrier.NKCC

concentration of extracellular Cl^- [mM]

Clo - Variable in class org.simBio.bio.terashima_et_al_2006.current.Diffusion

concentration of extracellular Cl- [mM]

close - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.IRyR

close state probability

close - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.channel.IRyR

close state probability

close - Variable in class org.simBio.bio.oka_et_al_2006.function.kinetics.MultiStateModel

closed state probability

close - Variable in class org.simBio.bio.oka_et_al_2006.function.kinetics.TwoStateModel

closed state probability

close - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.IRyR

close state probability

close() - Method in class org.simBio.sim.analyzer.graph.results.CachedBuffer

インスタンスを使用終了し、バッファファイルを開放する.

close() - Method in class org.simBio.sim.analyzer.graph.results.TimeSeriesValues

インスタンスを使用終了し、バッファファイルを開放する.

close() - Method in class org.simBio.sim.dm.util.StringInputStream

close() - Method in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork

クローズする ファイルが読み込まれなくてもク終了時のローズされることがあるので、 状態遷移エラーは発生させない。

closedState1 - Variable in class org.simBio.bio.himeno_et_al_2008.Iha

closedState1 - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.Iha

closedState2 - Variable in class org.simBio.bio.himeno_et_al_2008.Iha

closedState2 - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.Iha

Cm - Variable in class org.simBio.bio.hodgkin_huxley_1952.Membrane

membrane capacitance, initial value = 1.0 (microF_per_cm2)

Cm - Variable in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.Carrier

membrane capacitance (pF)

Cm - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.IRyR

membrane capacitance (pF)

Cm - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier

membrane capacitance (pF)

Cm - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.pipette.VoltageClamp

membrane capacitance

Cm - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Charge

membrane capacitance (pF)

Cm - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.KoDependency

membrane capacitance

Cm - Variable in class org.simBio.bio.sarai_et_al_2003.VoltageClamp

membrane capacitance (pF)

Cm - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.CfChannel

membrane capacitance [pF]

Cm - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.INaCa

membrane capacitance [pF]

Cm - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.IRyR

membrane capacitance (pF)

Cm - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.PMCA

membrane capacitance [pF]

Cm - Variable in class org.simBio.bio.tenTusscher_et_al_2004.function.Current

Cm - Variable in class org.simBio.bio.terashima_et_al_2006.complex.WaterFlux

membrane capacitance [pF]

Cm - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel

membrane capacitance [pF]

Cm - Variable in class org.simBio.bio.terashima_et_al_2006.current.channel.IRyR

membrane capacitance (pF)

Cm - Variable in class org.simBio.bio.terashima_et_al_2006.current.Diffusion

membrane capacitance [pF]

Cm - Variable in class org.simBio.bio.terashima_et_al_2006.current.potassium.PureKchannel

Cm - Variable in class org.simBio.sim.analyzer.measure.Vmax

Cm - Variable in class org.simBio.sim.analyzer.measure.VmaxTime

membrane capacitance (pS)

Cm1 - Variable in class org.simBio.bio.oka_et_al_2006.structure.GapJunction

membrane capacitance of cell #1 (pF)

Cm1 - Variable in class org.simBio.bio.sarai_noma_2004.structure.GapJunction

membrane capacitance of cell #1

Cm2 - Variable in class org.simBio.bio.oka_et_al_2006.structure.GapJunction

membrane capacitance of cell #2 (pS)

Cm2 - Variable in class org.simBio.bio.sarai_noma_2004.structure.GapJunction

membrane capacitance of cell #2

cmdnbar - Variable in class org.simBio.bio.faber_rudy_2000.molecule.DualCaBuffer

CN - Class in org.simBio.bio.matsuoka_et_al_2004.function.chemical

effect of CN addition.

CN() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.function.chemical.CN

CN - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.chemical.CN

cyanide concentration

cNa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

CNa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

to see Na current component

CNa - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

codebases - Variable in class org.simBio.sim.js.entry.Request

codebases

collapseAll() - Method in class org.simBio.sim.gui.JTreeTableSimBio

TreeTableの階層全体を収納する。

Collector - Class in org.simBio.serialize

Make a List of all the Node values in the model tree.

Collector(Component, List) - Constructor for class org.simBio.serialize.Collector

Collect values.

collectXMLs() - Method in class org.simBio.sim.ps.serialize.ParseXMLs

Check if XML-files should be collected in purpose to write a table of contents in a CSV- and a XML-file.

ColorUtil - Class in org.simBio.sim.analyzer.graph

Colour-related utility class.

ColorUtil() - Constructor for class org.simBio.sim.analyzer.graph.ColorUtil

COM_ALL - Static variable in class org.simBio.tools.remote.RemoteConstant

サーバコマンド value "all"

COM_CHECK - Static variable in class org.simBio.tools.remote.RemoteConstant

サーバコマンド value "check"

COM_DEPLOY - Static variable in class org.simBio.tools.remote.RemoteConstant

サーバコマンド value "deploy"

COM_EXIT - Static variable in class org.simBio.tools.remote.RemoteConstant

サーバコマンド value "exit"

COM_REBOOT - Static variable in class org.simBio.tools.remote.RemoteConstant

サーバコマンド value "reboot"

COM_SHUTDOWN - Static variable in class org.simBio.tools.remote.RemoteConstant

サーバコマンド value "shutdown"

COM_START - Static variable in class org.simBio.tools.remote.RemoteConstant

サーバコマンド value "start"

COM_UPDATE - Static variable in class org.simBio.tools.remote.RemoteConstant

サーバコマンド value "update"

CommandServer - Class in org.simBio.tools.remote

simBio コマンド通信クラス

CommandServer() - Constructor for class org.simBio.tools.remote.CommandServer

CommandServerUtil - Class in org.simBio.tools.remote

simBio 遠隔サーバユーティリティ

CommandServerUtil() - Constructor for class org.simBio.tools.remote.CommandServerUtil

comment(char[], int, int) - Method in class org.simBio.serialize.xml.LogSax2

Logs comments when debugging.

Compartment - Class in org.simBio.bio

Nodes folder, contain no equation.

Compartment() - Constructor for class org.simBio.bio.Compartment

Compartment - Class in org.simBio.bio.matsuoka_et_al_2003

This class is used for Nodes folder, contain no equation.

Compartment() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.Compartment

ComplexI - Class in org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain

NADH-Ubiquinone oxidoreductase (complex I).

ComplexI() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ComplexI

ComplexIII - Class in org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain

Cytochrome bc1 Complex (complex III).

ComplexIII() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ComplexIII

ComplexIV - Class in org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain

Cytochrome c Oxidase (complex IV).

ComplexIV() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ComplexIV

compliance - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.IVRCC

compliance of membrane

Component - Class in org.simBio.core

super class of the core package, similar to public String, Component of the Composite Pattern.

Component() - Constructor for class org.simBio.core.Component

Composer - Class in org.simBio

Compose model part xmls into a composed model xml.

Composer() - Constructor for class org.simBio.Composer

Composite - Class in org.simBio.core

Composite Pattern.

Composite() - Constructor for class org.simBio.core.Composite

Concentration - Class in org.simBio.core.integrator

The amount of ion (or molecule) is hold as value.

Concentration() - Constructor for class org.simBio.core.integrator.Concentration

ConcentrationAMP - Class in org.simBio.bio.kuzumoto_et_al_2007.function

calculation of AMP concentration (conformed to mass conservation law).

ConcentrationAMP() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.function.ConcentrationAMP

ConcentrationAMP - Class in org.simBio.bio.matsuoka_et_al_2004.function

calculation of AMP concentration (conformed to mass conservation law)

ConcentrationAMP() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationAMP

ConcentrationCyta2 - Class in org.simBio.bio.matsuoka_et_al_2004.function

Calculation of the concentration of Cytochrome a2+

ConcentrationCyta2() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationCyta2

ConcentrationPi - Class in org.simBio.bio.matsuoka_et_al_2004.function

calculation of iorganic phosphate concentration (conformed to mass conservation law)

ConcentrationPi() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationPi

conductance - Variable in class org.simBio.bio.faber_rudy_2000.current.Current

conductance - Variable in class org.simBio.bio.oka_et_al_2006.structure.GapJunction

conductance of gapjunction (nS)

conductance - Variable in class org.simBio.bio.sarai_noma_2004.structure.GapJunction

resistance of gapjunction

conductance - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IbCa

conductance - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IbNa

conductance - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.ICa

conductance - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IK1

conductance - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IKr

conductance - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IKs

conductance - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.INa

conductance - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IpCa

conductance - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IpK

conductance - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.Ito

conductance - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.Ito_endo

Conductor - Class in org.simBio.core

root instance to conduct integration.

Conductor() - Constructor for class org.simBio.core.Conductor

configDirHomeWindows - Static variable in class org.simBio.sim.gui.Constant

ホームディレクトリ取得の際に、システムプロパティ"user.home"に追加する文字列(Windows)

configDirKey - Static variable in class org.simBio.sim.gui.Constant

ホームディレクトリを得るシステムプロパティ

confirmOverrideDialogBox(String) - Method in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork

ファイル保存の際、上書きするかどうかの確認ダイアログボックスを開く

constant - Variable in class org.simBio.bio.kuzumoto_et_al_2007.function.KoDependency_IK1

constant value

constant - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.KoDependency

constant value

constant - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.Diffusion

rate constant of diffusion

constant - Variable in class org.simBio.bio.terashima_et_al_2006.function.KoDependency

constant value

constant - Variable in class org.simBio.bio.terashima_et_al_2006.function.KoDependency2

constant

Constant - Class in org.simBio.sim.gui

Constants used in GUI.

Constant() - Constructor for class org.simBio.sim.gui.Constant

ConstantField - Class in org.simBio.bio.matsuoka_et_al_2003.function

calculate constant field.

ConstantField() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.function.ConstantField

constantFieldCa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.CfChannel

Ca2+ flux calculated by constant field theory [mM]

constantFieldCa - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.CfChannel

Ca2+ flux calculated by constant field theory [mM]

constantFieldCa - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel

Ca2+ flux calculated by constant field theory [mM]

constantFieldCl - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.CfChannel

Cl- flux calculated by constant field theory [mM]

constantFieldCl - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel

Cl- flux calculated by constant field theory [mM]

constantFieldK - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.CfChannel

K+ flux calculated by constant field theory [mM]

constantFieldK - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.CfChannel

K+ flux calculated by constant field theory [mM]

constantFieldK - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel

K+ flux calculated by constant field theory [mM]

constantFieldNa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.CfChannel

Na+ flux calculated by constant field theory [mM]

constantFieldNa - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.CfChannel

Na+ flux calculated by constant field theory [mM]

constantFieldNa - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel

Na+ flux calculated by constant field theory [mM]

container - Variable in class org.simBio.sim.analyzer.graph.BasicGraph

container of the Viewer which the Graph belongs to

contentsChange() - Method in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork

内容が変更された事を登録する。

converter - Variable in class org.simBio.bio.kuzumoto_et_al_2007.function.Average

convert unit

converter - Variable in class org.simBio.bio.sarai_et_al_2006.function.Rate

convert unit

Couabain - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.INaK

ouabain concentration

Couabain - Variable in class org.simBio.bio.terashima_et_al_2006.current.carrier.INaK

ouabain concentration (mM)

cPKA - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ICFTR

fraction of cAMP-activated PKA

Cr - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.enzyme.CK

creatine concentration in cytosol

create(JavaSpace, String) - Static method in class org.simBio.sim.js.Channel

createTransferable(JComponent) - Method in class org.simBio.sim.gui.toolKit.dndmenu.DnDTransferHandler

ドラッグ用：データ転送のソースとして使用する Transferable を作成するハンドラ。 c が JButton を示す場合、Transferableインターフェースを持つActionを取得する。
c が JList を示す場合、Transferableインターフェースを持つActionを取得する。(getAction()を追加実装する必要あり)

crel - Variable in class org.simBio.bio.tenTusscher_et_al_2004.flux.Release

crossBridge - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL

CrossBridge - Class in org.simBio.bio.negroni_lascano_1996

Cross bridge kinetics of Cardiac Muscle Model by Negroni and Lascano.

CrossBridge() - Constructor for class org.simBio.bio.negroni_lascano_1996.CrossBridge

CrossBridge - Variable in class org.simBio.bio.noble_et_al_1998.Model

CrossBridgeForce - Class in org.simBio.bio.kuzumoto_et_al_2007.contraction

Cross bridge force of NL contraction model, Negroni JA and Lascano EC.

CrossBridgeForce() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.contraction.CrossBridgeForce

CrossBridgeLength - Class in org.simBio.bio.kuzumoto_et_al_2007.contraction

Length of cross bridge of NL contraction model, Negroni JA and Lascano EC.

CrossBridgeLength() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.contraction.CrossBridgeLength

CrossBridgeNL - Class in org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme

Cross bridge kinetics of Cardiac Muscle Model by Negroni and Lascano.

CrossBridgeNL() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme.CrossBridgeNL

CsvDialog - Class in org.simBio.sim.gui

CSV output dialog.

CsvDialog(Frame, Conductor, double, double, double, double, String) - Constructor for class org.simBio.sim.gui.CsvDialog

This is the default constructor

CsvHandler - Class in org.simBio.util

Convert csv file to XY series data.

CsvHandler() - Constructor for class org.simBio.util.CsvHandler

CsvMaker - Class in org.simBio.sim.analyzer.csv

Writes values to a file in csv format. If a directory which does not exist is included in the file path, the directory is created.

CsvMaker() - Constructor for class org.simBio.sim.analyzer.csv.CsvMaker

Current - Class in org.simBio.bio.faber_rudy_2000.current

sodium background current.

Current() - Constructor for class org.simBio.bio.faber_rudy_2000.current.Current

current - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

Current - Class in org.simBio.bio.matsuoka_et_al_2003.function

Calculate concentration (mM) change from current (pA).

Current() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.function.Current

Current - Class in org.simBio.bio.tenTusscher_et_al_2004.function

calculate concentration (M) change from current (A).

Current() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.function.Current

currentCa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

currentCa - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

currentCl - Variable in class org.simBio.bio.terashima_et_al_2006.current.MembraneTransporter

link to the Cl component (pA) of compartment

currentCl - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

CurrentClamp - Class in org.simBio.bio.matsuoka_et_al_2003.current.pipette

current clamp, external current in the RC membrane model.

CurrentClamp() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.pipette.CurrentClamp

CurrentClamp - Class in org.simBio.bio.tenTusscher_et_al_2004.current.pipette

current clamp, external current in the RC membrane model.

CurrentClamp() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.pipette.CurrentClamp

currentK - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

currentK - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

currentNa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

currentNa - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

cutDuration - Static variable in class org.simBio.ResultGenerator

CVS_MASTER - Static variable in class org.simBio.tools.remote.RemoteConstant

CVSノード cluster01

cycle - Variable in class org.simBio.bio.kuzumoto_et_al_2007.function.Average

cycle

cycle - Variable in class org.simBio.sim.analyzer.measure.AmplitudeInCycle

cycle

Cytc2 - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.OxidativePhosphorylation

cytochrome c2+ (reduced) concentration