org.simBio.bio.takeuchi_et_al_2006.current
Class CfChannel

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter
                      org.simBio.bio.terashima_et_al_2006.current.MembraneTransporter
                          org.simBio.bio.takeuchi_et_al_2006.current.CfChannel

All Implemented Interfaces:

Node

Direct Known Subclasses:

ICaL

public class CfChannel
extends MembraneTransporter

calculate current component of Na, K, Ca, and Cl ion according to the constant field theory. The type of Na, K, Cl and Ca permeabilities was changed from double to Node.

Version:

$Id: CfChannel.java,v 1.2 2006/11/22 05:29:11 nsarai Exp $

Author:

Ayako Takeuchi

See Also:

CfChannel

Field Summary

double	Cm membrane capacitance [pF]
Node	constantFieldCa Ca2+ flux calculated by constant field theory [mM]
Node	constantFieldCl Cl- flux calculated by constant field theory [mM]
Node	constantFieldK K+ flux calculated by constant field theory [mM]
Node	constantFieldNa Na+ flux calculated by constant field theory [mM]
Node	permeabilityCa channel permeability for Ca2+
Node	permeabilityCl channel permeability for Cl- [pA/pF/mM]
Node	permeabilityK channel permeability for K+ [pA/pF/mM][pA/pF/mM]
Node	permeabilityNa channel permeability for Na+ [pA/pF/mM]
double	pOpen open probability

Fields inherited from class org.simBio.bio.terashima_et_al_2006.current.MembraneTransporter

cCl, CCl, currentCl

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

cCa, CCa, cK, CK, cNa, CNa, current, currentCa, currentK, currentNa, total

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

CfChannel()

Method Summary

protected void

calculate(double t) add Cl current to Compartment.

Methods inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

prepare

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

Cm

public double Cm

membrane capacitance [pF]

constantFieldNa

public Node constantFieldNa

Na+ flux calculated by constant field theory [mM]

constantFieldK

public Node constantFieldK

K+ flux calculated by constant field theory [mM]

constantFieldCa

public Node constantFieldCa

Ca2+ flux calculated by constant field theory [mM]

constantFieldCl

public Node constantFieldCl

Cl- flux calculated by constant field theory [mM]

permeabilityNa

public Node permeabilityNa

channel permeability for Na+ [pA/pF/mM]

permeabilityK

public Node permeabilityK

channel permeability for K+ [pA/pF/mM][pA/pF/mM]

permeabilityCa

public Node permeabilityCa

channel permeability for Ca2+

permeabilityCl

public Node permeabilityCl

channel permeability for Cl- [pA/pF/mM]

pOpen

public double pOpen

open probability

Constructor Detail

CfChannel

public CfChannel()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: MembraneTransporter

add Cl current to Compartment.

Overrides:

calculate in class MembraneTransporter

Parameters:

t - time