A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

V

Va - Variable in class org.simBio.bio.henriquez_et_al_2001.GapJunction

potential alpha (mV)

val - Variable in class org.simBio.sim.ps.serialize.ParseXMLs.NameVal

valence - Variable in class org.simBio.bio.kuzumoto_et_al_2007.function.PA2MS

ion valence

valence - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.ConstantField

valence

valence - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Current

ion valence

valence - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.ReversalPotential

valence

valence - Variable in class org.simBio.bio.tenTusscher_et_al_2004.function.Current

valence - Variable in class org.simBio.bio.tenTusscher_et_al_2004.function.ReversalPotential2

value - Variable in class org.simBio.core.Parameter

present value.

ValueChangeObserver - Interface in org.simBio.sim.gui

DataListTableModelで、setValue()により値が変更された時に、監視オブジェクトに通知を行う.

values - Variable in class org.simBio.bio.function.StepChanger

values - Variable in class org.simBio.sim.analyzer.graph.BasicGraph

storage location of the time series data

values_ - Variable in class org.simBio.sim.dm.exchange.ListExchanger

valuesBuffer - Variable in class org.simBio.sim.analyzer.graph.AbstractGraph

buffer for temporary storage of calculation results

Vanderpol_model_1928 - Class in org.simBio.bio.cor

Conversion from CellML 1.0 to Java was done using COR (0.9.31.28)
Copyright (c) 2002-2005 Oxford Cardiac Electrophysiology Group

Vanderpol_model_1928() - Constructor for class org.simBio.bio.cor.Vanderpol_model_1928

Variable - Interface in org.simBio.core

VariableList - Class in org.simBio.core

include euler engine & dt adjuster

VariableList() - Constructor for class org.simBio.core.VariableList

Vb - Variable in class org.simBio.bio.henriquez_et_al_2001.GapJunction

potential beta (mV)

Vc - Variable in class org.simBio.bio.tenTusscher_et_al_2004.complex.SR

vC1 - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.OxidativePhosphorylation

rate of complex I

vC3 - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.OxidativePhosphorylation

rate of complex III

vC4 - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.OxidativePhosphorylation

rate of complex IV

VH - Variable in class org.simBio.bio.henriquez_et_al_2001.GapJunction

potential at high state (mV)

VHL - Variable in class org.simBio.bio.henriquez_et_al_2001.GapJunction

voltage across hemichannel at HL state (mV)

Vi - Variable in class org.simBio.bio.kurata_et_al_2005.complex.SR

Vi - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.ICaPump

cell volume accessible for ion diffusion

Vi - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.INaK

cell volume accessible for ion diffusion[um^3]

Vi - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.IPMCA

cell volume accessible for ion diffusion

Vi - Variable in class org.simBio.bio.kuzumoto_et_al_2007.function.PA2MS

internal volume (um^3)

Vi - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.ICaPump

cell volume accessible for ion diffusion

Vi - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaK

cell volume accessible for ion diffusion[um^3]

Vi - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Current

internal volume (um^3)

Vi - Variable in class org.simBio.bio.sarai_et_al_2006.current.carrier.IPMCA

cell volume accessible for ion diffusion

Vi - Variable in class org.simBio.bio.tenTusscher_et_al_2004.function.Current

Vi - Variable in class org.simBio.bio.terashima_et_al_2006.function.TotalVolume

the osmotically active cell volume (um^3)

Viewer - Class in org.simBio.sim.analyzer.graph.simple

graph viewer.

Viewer() - Constructor for class org.simBio.sim.analyzer.graph.simple.Viewer

Viewer - Class in org.simBio.sim.analyzer.graph

Graph viewer.

Viewer() - Constructor for class org.simBio.sim.analyzer.graph.Viewer

visit(Component) - Method in class org.simBio.core.Conductor

Add Variables to the list.

visit(Composite) - Method in class org.simBio.core.Conductor

add Reactors to ReactorList, and Analyzers to AnalyzerList.

visit(Component) - Method in interface org.simBio.core.Visitor

visit(Composite) - Method in interface org.simBio.core.Visitor

visit(Component) - Method in class org.simBio.serialize.Collector

visit(Composite) - Method in class org.simBio.serialize.Collector

visit(Component) - Method in class org.simBio.sim.analyzer.csv.Total

visit(Composite) - Method in class org.simBio.sim.analyzer.csv.Total

visit(Component) - Method in class org.simBio.sim.gui.DataListTable

visit(Composite) - Method in class org.simBio.sim.gui.DataListTable

visit(Component) - Method in class org.simBio.sim.gui.GUI

Visitor Pattern Interface : do nothing

visit(Composite) - Method in class org.simBio.sim.gui.GUI

Visitor Pattern Interface : set this to container of Viewer NOTICE: org.simBio.sim.analyser.graph.RateGraph#getJButton を、ToolBarに載せる場合は、 DnDActionの組み込みと、Save/Load 処理の対応が必要。

Visitor - Interface in org.simBio.core

Visitor pattern.

VisualizeAnalyzer - Class in org.simBio.sim.analyzer

base class for visualized Node(Viewer, Graph, Axis).

VisualizeAnalyzer() - Constructor for class org.simBio.sim.analyzer.VisualizeAnalyzer

Vj - Variable in class org.simBio.bio.henriquez_et_al_2001.GapJunction

junctional potential (mV)

VL - Variable in class org.simBio.bio.henriquez_et_al_2001.GapJunction

potential at low state (mV)

VL - Variable in class org.simBio.sim.analyzer.graph.simple.RelationGraph_LP

VLH - Variable in class org.simBio.bio.henriquez_et_al_2001.GapJunction

voltage across hemichannel at LH state (mV)

Vm - Variable in class org.simBio.bio.faber_rudy_2000.current.Current

Vm - Variable in class org.simBio.bio.faber_rudy_2000.current.RyR

Vm - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

Vm - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL

membrane potential (mV)

Vm - Variable in class org.simBio.bio.himeno_et_al_2008.Iha

Vm - Variable in class org.simBio.bio.himeno_et_al_2008.IKs

Membrane Potential (mV)

Vm - Variable in class org.simBio.bio.himeno_et_al_2008.Ist

membrane potential (mV)

Vm - Variable in class org.simBio.bio.hodgkin_huxley_1952.I_K

membrane potential, V, initial value = -75.0 (millivolt)

Vm - Variable in class org.simBio.bio.hodgkin_huxley_1952.I_L

membrane potential, V, initial value = -75.0 (millivolt)

Vm - Variable in class org.simBio.bio.hodgkin_huxley_1952.I_Na

membrane potential, V, initial value = -75.0 (millivolt)

Vm - Variable in class org.simBio.bio.hodgkin_huxley_1952.Membrane

membrane potential, V, initial value = -75.0 (millivolt)

Vm - Variable in class org.simBio.bio.kurata_et_al_2005.current.ICab

Vm - Variable in class org.simBio.bio.kurata_et_al_2005.current.ICaL

Vm - Variable in class org.simBio.bio.kurata_et_al_2005.current.IK1

Vm - Variable in class org.simBio.bio.kurata_et_al_2005.current.IKr

Vm - Variable in class org.simBio.bio.kurata_et_al_2005.current.IKs

Vm - Variable in class org.simBio.bio.kurata_et_al_2005.current.INa

Vm - Variable in class org.simBio.bio.kurata_et_al_2005.current.INab

Vm - Variable in class org.simBio.bio.kurata_et_al_2005.current.INaCa

Vm - Variable in class org.simBio.bio.kurata_et_al_2005.current.INaK

Vm - Variable in class org.simBio.bio.kurata_et_al_2005.current.Ito

Vm - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Release

Vm - Variable in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.INaCa

membrane potential of cell[mV]

Vm - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.INaK

membrane potential of cell[mV]

Vm - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL

membrane potential (mV)

Vm - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.IKs

Membrane Potential (mV)

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaCa

membrane potential of cell[mV]

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaK

membrane potential of cell[mV]

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaL

membrane potential (mV)

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaT

membrane potential

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.Iha

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.IKpl

membrane potential (mV)

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.INa

membrane potential (mV)

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.Ist

membrane potential (mV)

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.Ito

membrane potential (mV)

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.channel.Channel

effective Vm.

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.pipette.VoltageClamp

membrane potential

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.potassium.IKs

Membrane Potential(mV)

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.potassium.PureKchannel

membrane potential (mV)

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Charge

membrane potential (mV)

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.ConstantField

membrane potential (mV)

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.RateConstantK

Vm - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.RateConstantVm

Vm - Variable in class org.simBio.bio.sarai_et_al_2003.VoltageClamp

membrane potential (mV)

Vm - Variable in class org.simBio.bio.sarai_et_al_2006.current.cf.ICaL

membrane potential (mV)

Vm - Variable in class org.simBio.bio.sarai_noma_2004.VoltageClamp

Vm - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.ICaL

membrane potential (mV)

Vm - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.INaCa

membrane potential [mV]

Vm - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.carrier.INaCa

Vm - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.carrier.INaK

Vm - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IbCa

Vm - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IbNa

Vm - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.ICa

Vm - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IK1

Vm - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IKr

Vm - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IKs

Vm - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.INa

Vm - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IpK

Vm - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.Ito

Vm - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.Ito_endo

Vm - Variable in class org.simBio.bio.tenTusscher_et_al_2004.flux.Release

Vm - Variable in class org.simBio.bio.tenTusscher_et_al_2004.function.Charge

Vm - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ICaL

membrane potential (mV)

Vm - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ICaT

membrane potential

Vm - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.Iha

Vm - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.IKpl

membrane potential (mV)

Vm - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.INa

membrane potential (mV)

Vm - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.Ist

Vm - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.Ito

membrane potential (mV)

Vm - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.IVRCC

membrane potential [mV]

Vm - Variable in class org.simBio.bio.terashima_et_al_2006.current.potassium.IKs

Membrane Potential(mV)

Vm - Variable in class org.simBio.bio.terashima_et_al_2006.current.potassium.PureKchannel

membrane potential (mV)

Vm - Variable in class org.simBio.sim.analyzer.graph.simple.RelationGraph_LP

Vm - Variable in class org.simBio.sim.analyzer.measure.APD

Vm - Variable in class org.simBio.sim.analyzer.measure.APDforSA

膜電位 (mV)

Vm - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

Vm1 - Variable in class org.simBio.bio.oka_et_al_2006.function.JunctionalPotential

membrane potential of cell no 1

Vm1 - Variable in class org.simBio.bio.oka_et_al_2006.structure.GapJunction

membrane potential of cell #1 (mV)

Vm1 - Variable in class org.simBio.bio.sarai_noma_2004.structure.GapJunction

membrane potential of cell #1

Vm2 - Variable in class org.simBio.bio.oka_et_al_2006.function.JunctionalPotential

membrane potential of cell no 2

Vm2 - Variable in class org.simBio.bio.oka_et_al_2006.structure.GapJunction

membrane potential of cell #2 (mV)

Vm2 - Variable in class org.simBio.bio.sarai_noma_2004.structure.GapJunction

membrane potential of cell #2

Vmax - Variable in class org.simBio.bio.tenTusscher_et_al_2004.flux.Leak

Vmax - Class in org.simBio.sim.analyzer.measure

Measuring dV/dt max.

Vmax() - Constructor for class org.simBio.sim.analyzer.measure.Vmax

Vmax - Variable in class org.simBio.sim.analyzer.measure.VmaxTime

Vmax: maximum rate of rise (mV/ms)

VmaxPP2A_Inhib1 - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB

rate constant

VmaxTime - Class in org.simBio.sim.analyzer.measure

measure Vmax and timing of Vmax.

VmaxTime() - Constructor for class org.simBio.sim.analyzer.measure.VmaxTime

Vmaxup - Variable in class org.simBio.bio.tenTusscher_et_al_2004.flux.UpTake

Vn - Variable in class org.simBio.bio.terashima_et_al_2006.function.TotalVolume

the osmotically inactive cell volume (um^3)

Vo - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Current

external volume (um^3)

VoltageClamp - Class in org.simBio.bio.matsuoka_et_al_2003.current.pipette

voltage clamp protocol.

VoltageClamp() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.pipette.VoltageClamp

VoltageClamp - Class in org.simBio.bio.sarai_et_al_2003

Voltage clamp.

VoltageClamp() - Constructor for class org.simBio.bio.sarai_et_al_2003.VoltageClamp

VoltageClamp - Class in org.simBio.bio.sarai_noma_2004

apply square voltage pulse

VoltageClamp() - Constructor for class org.simBio.bio.sarai_noma_2004.VoltageClamp

Volume - Class in org.simBio.bio.matsuoka_et_al_2003.function

Volume() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.function.Volume

volume - Variable in class org.simBio.bio.takeuchi_et_al_2006.function.Electroneutrality

intracellular actuve volume [um^3]

volume - Variable in class org.simBio.bio.tenTusscher_et_al_2004.complex.SR

Volume - Class in org.simBio.bio.terashima_et_al_2006.function

Volume() - Constructor for class org.simBio.bio.terashima_et_al_2006.function.Volume

volume1 - Variable in class org.simBio.bio.oka_et_al_2006.structure.GapJunctionK

cell volume of cell #1 (um³)

volume2 - Variable in class org.simBio.bio.oka_et_al_2006.structure.GapJunctionK

cell volume of cell #2 (um³)

volumeext - Variable in class org.simBio.bio.terashima_et_al_2006.complex.WaterFlux

extracellular volume [um³]

volumeint - Variable in class org.simBio.bio.terashima_et_al_2006.complex.WaterFlux

intracellular volume [um³]

VolumeRatio - Class in org.simBio.bio.matsuoka_et_al_2004.function

Calculation of volume ratio between cell and organella.

VolumeRatio() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.function.VolumeRatio

VolumeRatio - Class in org.simBio.bio.terashima_et_al_2006.experiment

Calculate volume ratio to initial volume.

VolumeRatio() - Constructor for class org.simBio.bio.terashima_et_al_2006.experiment.VolumeRatio

Vrel - Variable in class org.simBio.bio.kurata_et_al_2005.complex.SR

Vshift - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL

a shift of activation potential for 4 state voltage gate

Vshift - Variable in class org.simBio.bio.himeno_et_al_2008.IKs

Vshift - Variable in class org.simBio.bio.himeno_et_al_2008.Ist

a shift of activation potential for 4 state voltage gate

Vshift - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL

a shift of activation potential for 4 state voltage gate

Vshift - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.IKs

Vshift - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaL

a shift of activation potential for 4 state voltage gate

Vshift - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.Ist

a shift of activation potential for 4 state voltage gate

Vshift - Variable in class org.simBio.bio.sarai_et_al_2006.current.cf.ICaL

a shift of activation potential for 4 state voltage gate

Vshift - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.Iha

Vt - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.IVRCC

intracellular volume [um^3]

Vt - Variable in class org.simBio.bio.terashima_et_al_2006.experiment.VolumeRatio

total cell volume (um^3)

Vt - Variable in class org.simBio.bio.terashima_et_al_2006.function.AmplitudeNaK

total cell volume [um^3]

Vup - Variable in class org.simBio.bio.kurata_et_al_2005.complex.SR