A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

P

P - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Leak
permeability factor (/ms)
P - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Release
 
P - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Uptake
permeability factor (mM/ms)
P - Variable in class org.simBio.bio.terashima_et_al_2006.current.carrier.NKCC
factor to define the maximum flux via NKCC1 [amol]
pa - Variable in class org.simBio.bio.kurata_et_al_2005.current.IKr
 
PA2MS - Class in org.simBio.bio.kuzumoto_et_al_2007.function
Average and Convert pA to M/S.
PA2MS() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.function.PA2MS
 
page - Variable in class org.simBio.sim.analyzer.graph.AbstractGraph
Viewer that this Graph is placed on
page - Variable in class org.simBio.sim.analyzer.graph.simple.Axis
 
page - Variable in class org.simBio.sim.analyzer.graph.simple.RelationGraph_LP
 
pAI - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL
AI state probability for voltage-dependent gate
pAI - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
AI state probability for voltage-dependent gate
pAI - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaL
AI state probability for voltage-dependent gate
pAI - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.INa
AI state probability for voltage-dependent gate
pAI - Variable in class org.simBio.bio.sarai_et_al_2006.current.cf.ICaL
AI state probability for voltage-dependent gate
pAI - Variable in class org.simBio.bio.sarai_noma_2004.fourState.ODE
 
pAI - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.ICaL
AI state probability for voltage-dependent gate
pAI - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ICaL
AI state probability for voltage-dependent gate
pAI - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.INa
AI state probability for voltage-dependent gate
paintAxises(Graphics2D, IPlot) - Method in class org.simBio.sim.analyzer.graph.AbstractGraph
Initialize graph area, and draw axes and grids.
paintBackground(Graphics2D, IPlot) - Method in class org.simBio.sim.analyzer.graph.AbstractGraph
Draw background.
paintComponent(Graphics) - Method in class org.simBio.sim.analyzer.graph.AbstractGraph
Performs Graph screen drawing.
paintComponent(Graphics) - Method in interface org.simBio.sim.analyzer.graph.IViewer
 
paintComponent(Graphics) - Method in class org.simBio.sim.analyzer.graph.simple.Viewer
Viewerの画面用描画を行う.
paintComponent(Graphics) - Method in class org.simBio.sim.analyzer.graph.Viewer
Draws a screen of the Viewer.
paintComponent(Graphics) - Method in class org.simBio.sim.gui.GUI.JPrintablePanel
 
paintGraph(Graphics2D, IPlot) - Method in class org.simBio.sim.analyzer.graph.AbstractGraph
Draw graph.
paintGraph(Graphics2D, IPlot) - Method in class org.simBio.sim.analyzer.graph.BasicGraph
 
paintGraph(Graphics2D, IPlot) - Method in class org.simBio.sim.analyzer.graph.Graph
Draws a graph.
paintGraphSub(Graphics2D, IPlot) - Method in class org.simBio.sim.analyzer.graph.BasicGraph
Performs graph drawing. Faithfully plots the value of each instant.
paintGraphSub(Graphics2D, IPlot) - Method in class org.simBio.sim.analyzer.graph.RelationGraph
 
paintLegend(Graphics2D, IPlot) - Method in class org.simBio.sim.analyzer.graph.AbstractGraph
Draw legend.
pAP - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL
AP state probability for voltage-dependent gate
pAP - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
AP state probability for voltage-dependent gate
pAP - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaL
AP state probability for voltage-dependent gate
pAP - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.INa
AP state probability for voltage-dependent gate
pAP - Variable in class org.simBio.bio.sarai_et_al_2006.current.cf.ICaL
AP state probability for voltage-dependent gate
pAP - Variable in class org.simBio.bio.sarai_noma_2004.fourState.ODE
 
pAP - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.ICaL
AP state probability for voltage-dependent gate
pAP - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ICaL
AP state probability for voltage-dependent gate
pAP - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.INa
AP state probability for voltage-dependent gate
parabola - Class in org.simBio.bio
for test.
parabola() - Constructor for class org.simBio.bio.parabola
 
ParallelElementForce - Class in org.simBio.bio.kuzumoto_et_al_2007.contraction
Parallel element force of NL contraction model, Negroni JA and Lascano EC.
ParallelElementForce() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.contraction.ParallelElementForce
 
Parameter - Class in org.simBio.core
labeled public double, Component of the Composite Pattern.
Parameter() - Constructor for class org.simBio.core.Parameter
 
ParameterChanger - Class in org.simBio.sim.dm
パラメータを変更したXMLデータを生成するクラス。
ParameterChanger(InputStream, InputStream) - Constructor for class org.simBio.sim.dm.ParameterChanger
Parse XML files and run randomizer.
ParameterChanger(InputStream) - Constructor for class org.simBio.sim.dm.ParameterChanger
Parse XML files and run randomizer.
parameters - Variable in class org.simBio.sim.analyzer.csv.keep.ParamEvalKeeper
targetsの中の最初にある、変化させてるパラメータの数。残りのtargetは評価値と見なす。
ParameterSpace - Class in org.simBio.sim.ps
ResultGeneratorの計算結果を集めて保持する。
ParameterSpace(String, String) - Constructor for class org.simBio.sim.ps.ParameterSpace
 
ParamEvalKeeper - Class in org.simBio.sim.analyzer.csv.keep
Keep changing parameters and evaluaion values and write to csv.
ParamEvalKeeper() - Constructor for class org.simBio.sim.analyzer.csv.keep.ParamEvalKeeper
 
paramPrefix - Variable in class org.simBio.sim.analyzer.csv.keep.ParamEvalKeeper
parameter名の頭に付ける親の名前の数
paramRef - Static variable in class org.simBio.sim.ps.Result
reference value of the changing parameters
params - Variable in class org.simBio.sim.ps.serialize.ParseXMLs.Result
 
parent - Variable in class org.simBio.sim.analyzer.graph.plot.AbstractPlot
 
ParseNodeXML - Class in org.simBio.tools.remote
node.xml
parseXML(InputStream) - Static method in class org.simBio.sim.dm.util.DOMHandler
Parse XML-file.
ParseXMLs - Class in org.simBio.sim.ps.serialize
Query XML files, write a table of contents in a Csv and a XML.
ParseXMLs(InputStream) - Constructor for class org.simBio.sim.ps.serialize.ParseXMLs
 
ParseXMLs(Document) - Constructor for class org.simBio.sim.ps.serialize.ParseXMLs
 
ParseXMLs.NameVal - Class in org.simBio.sim.ps.serialize
 
ParseXMLs.NameVal() - Constructor for class org.simBio.sim.ps.serialize.ParseXMLs.NameVal
 
ParseXMLs.Result - Class in org.simBio.sim.ps.serialize
 
ParseXMLs.Result() - Constructor for class org.simBio.sim.ps.serialize.ParseXMLs.Result
 
PartialPotential - Class in org.simBio.bio.matsuoka_et_al_2004.function
calcuration of partial potential.
PartialPotential() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.function.PartialPotential
 
PartialPressure - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.PressureToConcentration
 
partition - Variable in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.INaCa
distribution constant
partition - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaCa
distribution constant
patternString - Variable in class org.simBio.sim.analyzer.graph.Axis
Label format string
pC - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL
C state probability for calcium-dependent gate
pC - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
C state probability for calcium-dependent gate
pC - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaL
C state probability for calcium-dependent gate
pC - Variable in class org.simBio.bio.sarai_et_al_2006.current.cf.ICaL
C state probability for calcium-dependent gate
pC - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.ICaL
C state probability for Ca2+-dependent gate
pC - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ICaL
C state probability for calcium-dependent gate
Pca - Variable in class org.simBio.bio.faber_rudy_2000.current.ICaL
 
PCa - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL
 
PCa - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
 
pCa - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL
 
pCaCB - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL
 
pCB - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL
 
PCl - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL
 
PCl - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
 
pClose - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.channel.IRyR
close state probability
PCr - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationPi
phosphocreatine concentration in cytosol
PCr - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.enzyme.CK
phosphocreatine concentration in cytosol
PD - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.SubstrateDehydrogenation
power factor
PDE - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.CAMP
Phosphodiesterase concentration (mM)
pE1S - Variable in class org.simBio.bio.terashima_et_al_2006.current.carrier.NKCC
probability of pE1S
pE1total - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.INaCa
E1 probability
peak - Variable in class org.simBio.sim.analyzer.measure.APD
 
PeakDetect - Class in org.simBio.sim.analyzer.measure
PeakDetect() - Constructor for class org.simBio.sim.analyzer.measure.PeakDetect
 
percent - Variable in class org.simBio.sim.analyzer.measure.APD
 
percent - Variable in class org.simBio.sim.analyzer.measure.APDforSA2
活動電位と見なす閾値 (%)
period - Variable in class org.simBio.bio.noble_et_al_1998.Model
 
permeabilityCa - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.IRyR
membrane permeability
permeabilityCa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.CfChannel
channel permeability for Ca2+
permeabilityCa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.channel.IRyR
membrane permeability
permeabilityCa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.Diffusion
membrane permeability for Ca2+
permeabilityCa - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.CfChannel
channel permeability for Ca2+
permeabilityCa - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.IRyR
membrane permeability
permeabilityCa - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.PMCA
factor to define the maximum PMCA current [pA/pF]
permeabilityCa - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel
channel permeability for Ca2+
permeabilityCa - Variable in class org.simBio.bio.terashima_et_al_2006.current.Diffusion
membrane permeability for Ca2+
permeabilityCaMax - Variable in class org.simBio.bio.sarai_et_al_2006.current.cf.ICaL
maximum Ca permeability
permeabilityCl - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.CfChannel
channel permeability for Cl- [pA/pF/mM]
permeabilityCl - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel
channel permeability for Cl- [pA/pF/mM]
permeabilityCl - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.IVRCC
converting factor for IVRCC [pA/pF/mM]
permeabilityCl - Variable in class org.simBio.bio.terashima_et_al_2006.current.Diffusion
membrane permeability for Cl-
permeabilityK - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.CfChannel
channel permeability for K+ [pA/pF/mM][pA/pF/mM]
permeabilityK - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.Diffusion
membrane permeability for K+
permeabilityK - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.potassium.PureKchannel
channel permeability for potassium
permeabilityK - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.CfChannel
channel permeability for K+ [pA/pF/mM][pA/pF/mM]
permeabilityK - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel
channel permeability for K+ [pA/pF/mM][pA/pF/mM]
permeabilityK - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.IClb
converting factor (conductance) for K+ background current [pA/pF/mM]
permeabilityK - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.INab
converting factor (conductance) for K+ background current [pA/pF/mM]
permeabilityK - Variable in class org.simBio.bio.terashima_et_al_2006.current.Diffusion
membrane permeability for K+
permeabilityK - Variable in class org.simBio.bio.terashima_et_al_2006.current.potassium.PureKchannel
channel permeability for potassium
permeabilityK0 - Variable in class org.simBio.bio.himeno_et_al_2008.IKs
 
permeabilityK0 - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.IKs
 
permeabilityNa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.CfChannel
channel permeability for Na+ [pA/pF/mM]
permeabilityNa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.Diffusion
membrane permeability for Na+
permeabilityNa - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.CfChannel
channel permeability for Na+ [pA/pF/mM]
permeabilityNa - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel
channel permeability for Na+ [pA/pF/mM]
permeabilityNa - Variable in class org.simBio.bio.terashima_et_al_2006.current.Diffusion
membrane permeability for Na+
pH - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.buffer.HBuffering
a measure of the activity of hydrogen ions (H+) in a solution
pHcell - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.GradientpH
pH of cytosol
pHcell - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter.PhosphateCarrier
pH in cytosol
Phi - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.IK1
the proportion of the channels that are in the high-affinity mode (Mode1)
pHmit - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.GradientpH
pH of mitochondrial matrix
pHmito - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter.PhosphateCarrier
pH in mitochondrial matrix
PhosphateCarrier - Class in org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter
Phosphate Transporter.
PhosphateCarrier() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter.PhosphateCarrier
 
Phosphorylation - Variable in class org.simBio.bio.himeno_et_al_2008.IKs
 
Phosphorylation - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.IPMCA
 
Phosphorylation - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.IKs
 
Pi - Variable in class org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponinmit
 
Pi - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.ICaPump
 
Pi - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.INaK
 
Pi - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.IPMCA
 
Pi - Variable in class org.simBio.bio.matsuoka_et_al_2004.current.carrier.INaK
 
Pi - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.buffer.Ca.TroponinNL_RK
 
Pimit - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationPi
iorganic phosphate concentration in mitochondria
Pipette - Class in org.simBio.bio.matsuoka_et_al_2003.current.pipette
external current in the RC membrane model.
Pipette() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.pipette.Pipette
 
Pipette - Class in org.simBio.bio.tenTusscher_et_al_2004.current.pipette
external current in the RC membrane model.
Pipette() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.pipette.Pipette
 
Pitcell - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter.PhosphateCarrier
inorganic phosphate concentration in cytosol (mM)
Pitmito - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ATPsynthase
inorganic phosphate concentration in mitochondrial matrix
Pitmito - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter.PhosphateCarrier
inorganic phosphate concentration in mitochondrial matrix (mM)
PiTotal - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationPi
total iorganic phosphate concentration in whole cell
Pk - Variable in class org.simBio.bio.faber_rudy_2000.current.ICaL
 
PK - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL
 
PK - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
 
PKA - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL
PKA catalitic domain I concentration
PKA - Variable in class org.simBio.bio.himeno_et_al_2008.IKs
 
PKA - Variable in class org.simBio.bio.himeno_et_al_2008.Ist
PKA catalitic domain I concentration
PKA - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.INaK
PKA phosphorylation parameter *
PKA - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.IPMCA
PKA type I concentration (mM)
PKA - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
PKA catalitic domain I concentration
PKA - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICFTR
PKA catalitic domain I concentration
PKA - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.IKs
 
PKA - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.BetaAR_Gs
PKA catalitic domain I
PKA - Class in org.simBio.bio.kuzumoto_et_al_2007.molecule
PKA module.
PKA() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.molecule.PKA
 
PKA - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PKA
PKA concentration (mM)
PKA - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB
PKA catalytic domain I concentration (mM)
pKa - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter.PhosphateCarrier
acid dissociation constant
PKA0 - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL
 
PKA0 - Variable in class org.simBio.bio.himeno_et_al_2008.Ist
 
PKA0 - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
 
PKA_fac - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL
 
PKA_fac - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
 
PKACI_PKI - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PKA
PKA and PKI complex concentration (mM)
PKAtot - Variable in class org.simBio.bio.himeno_et_al_2008.IKs
 
PKAtot - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.IKs
 
PKAtot - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PKA
 
PKI - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PKA
protein kinase inhibitor (mM)
PKItot - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PKA
 
pKNa - Variable in class org.simBio.bio.tenTusscher_et_al_2004.function.ReversalPotential2
 
PKToPCa - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.ICaL
ratio of K+ to Ca2+ permeability
PLB - Class in org.simBio.bio.kuzumoto_et_al_2007.molecule
Phospholamban module.
PLB() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB
 
PLB - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB
PLB concentration (mM)
PLBItot - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB
PLB total concentration (mM)
PLBp - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB
phosphorylated PLB concentration (mM)
PLBphos - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.ICaPump
ratio of phosphorylated fraction of phospholamban
PLBphos - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB
percent of PLB phosphorylation
plot() - Method in class org.simBio.sim.analyzer.graph.simple.RateGraph
 
plot() - Method in class org.simBio.sim.analyzer.graph.simple.RateGraph_KA
 
plotAxis(Graphics2D, IPlot) - Method in class org.simBio.sim.analyzer.graph.Axis
Draw the axis grid/label. Sets the interval appropriately, if gridStep is not yet set or below 0.
plotAxises(Axis, Axis) - Method in interface org.simBio.sim.analyzer.graph.simple.ICanvas
plot axses and grids
plotAxises(Axis, Axis) - Method in class org.simBio.sim.analyzer.graph.simple.Viewer
plot axses and grids
PlotContour - Class in org.simBio.sim.ps.view
Plot 2D parameters space of the model.
plotDisplay - Variable in class org.simBio.sim.analyzer.graph.AbstractGraph
instance of a screen drawing operation
PlotDisplay - Class in org.simBio.sim.analyzer.graph.plot
画面用の描画処理を行うためのクラス.
PlotDisplay(AbstractGraph) - Constructor for class org.simBio.sim.analyzer.graph.plot.PlotDisplay
 
PlotDisplay.LegendItem - Class in org.simBio.sim.analyzer.graph.plot
凡例用の画面描画Itemクラス.
PlotDisplay.LegendItem() - Constructor for class org.simBio.sim.analyzer.graph.plot.PlotDisplay.LegendItem
 
PlotDisplay.TitleItem - Class in org.simBio.sim.analyzer.graph.plot
タイトル用の画面描画Itemクラス.
PlotDisplay.TitleItem() - Constructor for class org.simBio.sim.analyzer.graph.plot.PlotDisplay.TitleItem
 
PlotLine - Class in org.simBio.sim.ps.view
Plot parameters space of the model as line chart.
PlotLouncher - Class in org.simBio.sim.ps.view
ParameterSpaceの持っているデータをグラフ表示する。
PlotLouncher() - Constructor for class org.simBio.sim.ps.view.PlotLouncher
 
plotPrinter - Variable in class org.simBio.sim.analyzer.graph.AbstractGraph
instance of a printing operation
PlotPrinter - Class in org.simBio.sim.analyzer.graph.plot
印刷用の描画処理を行うためのクラス.
PlotPrinter(AbstractGraph) - Constructor for class org.simBio.sim.analyzer.graph.plot.PlotPrinter
 
PlotPrinter.LegendItem - Class in org.simBio.sim.analyzer.graph.plot
凡例用の印刷描画Itemクラス.
PlotPrinter.LegendItem() - Constructor for class org.simBio.sim.analyzer.graph.plot.PlotPrinter.LegendItem
 
PlotPrinter.TitleItem - Class in org.simBio.sim.analyzer.graph.plot
タイトル用の印刷描画Itemクラス.
PlotPrinter.TitleItem() - Constructor for class org.simBio.sim.analyzer.graph.plot.PlotPrinter.TitleItem
 
PlotTimeSeries - Class in org.simBio.sim.ps.view
Plot time series data of the model as line chart.
PMCA - Class in org.simBio.bio.takeuchi_et_al_2006.current
sarcolemmal Ca2+ pump.
PMCA() - Constructor for class org.simBio.bio.takeuchi_et_al_2006.current.PMCA
 
Pna - Variable in class org.simBio.bio.faber_rudy_2000.current.ICaL
 
PNa - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL
 
PNa - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
 
PNaToPCa - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.ICaL
ratio of Na+ to Ca2+ permeability
pOpen - Variable in class org.simBio.bio.faber_rudy_2000.current.Current
 
POpen - Variable in class org.simBio.bio.himeno_et_al_2008.IKs
 
POpen - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICFTR
open probability
POpen - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.IKs
 
pOpen - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.CfChannel
open probability
pOpen - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.channel.Channel
open probability.
pOpen - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.channel.IRyR
open state probability
pOpen - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.potassium.PureKchannel
open probability
pOpen - Variable in class org.simBio.bio.oka_et_al_2006.function.JunctionalConductance
the mean open probability of the gates
pOpen - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.CfChannel
open probability
pOpen - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel
open probability
POpen - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ICFTR
open probability
POpen - Variable in class org.simBio.bio.terashima_et_al_2006.current.potassium.IKr
 
pOpen - Variable in class org.simBio.bio.terashima_et_al_2006.current.potassium.PureKchannel
open probability
position - Variable in class org.simBio.sim.js.entry.Index
 
position - Variable in class org.simBio.sim.js.entry.Request
position # of request in channel
Position_of_energy_barrier - Variable in class org.simBio.bio.faber_rudy_2000.current.INaCa
 
Positive - Class in org.simBio.core.integrator
keep the value positive.
Positive() - Constructor for class org.simBio.core.integrator.Positive
 
PositiveRK - Class in org.simBio.core.integrator
Keep the value positive, for Runge-Kutta.
PositiveRK() - Constructor for class org.simBio.core.integrator.PositiveRK
 
potassium_channel_g_K - Variable in class org.simBio.bio.cor.Hodgkin_huxley_squid_axon_1952_modified
potassium_channel_g_K (milliS_per_cm2).
potassium_channel_n_gate_n - Variable in class org.simBio.bio.cor.Hodgkin_huxley_squid_axon_1952_modified
potassium_channel_n_gate_n (dimensionless).
power - Variable in class org.simBio.bio.kuzumoto_et_al_2007.function.KoDependency_IK1
power
power - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.KoDependency
power
power - Variable in class org.simBio.bio.terashima_et_al_2006.function.KoDependency
power
power - Variable in class org.simBio.bio.terashima_et_al_2006.function.KoDependency2
power
PP1 - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB
protein phosphatase-1 concentration (mM)
PP1_Inhib1p - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB
protein phosphatase-1 and phosphorylated inhibitor-1 complex concentration (mM)
PP1tot - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB
total protein phosphatase 1 (mM)
ppu - Variable in class org.simBio.sim.analyzer.graph.simple.Axis
 
prefix_ - Variable in class org.simBio.sim.dm.exchange.FileNameExchanger
 
prepare() - Method in class org.simBio.bio.faber_rudy_2000.structure.Cell
 
prepare() - Method in class org.simBio.bio.faber_rudy_2000.structure.JSR
 
prepare() - Method in class org.simBio.bio.faber_rudy_2000.structure.NSR
 
prepare() - Method in class org.simBio.bio.function.StepChanger
 
prepare() - Method in class org.simBio.bio.himeno_et_al_2008.ICaL
 
prepare() - Method in class org.simBio.bio.himeno_et_al_2008.IKs
initialization for IKs.
prepare() - Method in class org.simBio.bio.kurata_et_al_2005.molecule.CaBuffer_RK
 
prepare() - Method in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.INaCa
 
prepare() - Method in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.ICaPump
 
prepare() - Method in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.INaK
 
prepare() - Method in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.IPMCA
 
prepare() - Method in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
 
prepare() - Method in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICFTR
 
prepare() - Method in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.IKs
initialization for IKs.
prepare() - Method in class org.simBio.bio.kuzumoto_et_al_2007.current.IRyR
 
prepare() - Method in class org.simBio.bio.kuzumoto_et_al_2007.function.Average
 
prepare() - Method in class org.simBio.bio.kuzumoto_et_al_2007.function.PA2MS
 
prepare() - Method in class org.simBio.bio.kuzumoto_et_al_2007.molecule.BetaAR_Gs
 
prepare() - Method in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PKA
 
prepare() - Method in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB
 
prepare() - Method in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.ICaPump
 
prepare() - Method in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaCa
 
prepare() - Method in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaK
 
prepare() - Method in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaL
 
prepare() - Method in class org.simBio.bio.matsuoka_et_al_2003.current.cf.INa
set reversal potential
prepare() - Method in class org.simBio.bio.matsuoka_et_al_2003.current.cf.Ito
set the initial value to permeability
prepare() - Method in class org.simBio.bio.matsuoka_et_al_2003.current.channel.IRyR
 
prepare() - Method in class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter
construct null current
prepare() - Method in class org.simBio.bio.matsuoka_et_al_2003.current.pipette.Pipette
 
prepare() - Method in class org.simBio.bio.matsuoka_et_al_2003.current.pipette.VoltageClamp
 
prepare() - Method in class org.simBio.bio.matsuoka_et_al_2003.current.potassium.IKs
initialization for IKs
prepare() - Method in class org.simBio.bio.matsuoka_et_al_2003.function.Current
 
prepare() - Method in class org.simBio.bio.matsuoka_et_al_2003.function.Diffusion_t
 
prepare() - Method in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.ODE
 
prepare() - Method in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL
 
prepare() - Method in class org.simBio.bio.negroni_lascano_1996.exp.LChange
 
prepare() - Method in class org.simBio.bio.negroni_lascano_1996.Qpump
 
prepare() - Method in class org.simBio.bio.negroni_lascano_1996.Qrel
 
prepare() - Method in class org.simBio.bio.oka_et_al_2006.function.kinetics.IndependentGate
 
prepare() - Method in class org.simBio.bio.oka_et_al_2006.function.kinetics.MultiStateModel
 
prepare() - Method in class org.simBio.bio.oka_et_al_2006.function.kinetics.RateConstantCaGate
Calculate forward and backward rate constants
prepare() - Method in class org.simBio.bio.oka_et_al_2006.structure.GapJunctionK
 
prepare() - Method in class org.simBio.bio.sarai_et_al_2003.ICaL
 
prepare() - Method in class org.simBio.bio.sarai_et_al_2003.Ist
 
prepare() - Method in class org.simBio.bio.sarai_et_al_2003.VoltageClamp
 
prepare() - Method in class org.simBio.bio.sarai_et_al_2006.current.carrier.IPMCA
 
prepare() - Method in class org.simBio.bio.sarai_et_al_2006.current.cf.ICaL
 
prepare() - Method in class org.simBio.bio.sarai_et_al_2006.function.Rate
 
prepare() - Method in class org.simBio.bio.sarai_noma_2004.fourState.MonteCarlo
determine initial state of single channels Method determineInitialState.
prepare() - Method in class org.simBio.bio.sarai_noma_2004.fourState.NaChannel
read initial values from GUI.
prepare() - Method in class org.simBio.bio.sarai_noma_2004.fourState.ODE
read initial values from GUI.
prepare() - Method in class org.simBio.bio.sarai_noma_2004.VoltageClamp
set membrane potential = holding potential
prepare() - Method in class org.simBio.bio.takeuchi_et_al_2006.current.IRyR
 
prepare() - Method in class org.simBio.bio.terashima_et_al_2006.current.carrier.INaK
 
prepare() - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.ICaL
 
prepare() - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.ILCCa
 
prepare() - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.INa
set reversal potential
prepare() - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.Ist
 
prepare() - Method in class org.simBio.bio.terashima_et_al_2006.current.cf.Ito
set the initial value of permeability
prepare() - Method in class org.simBio.bio.terashima_et_al_2006.current.channel.IRyR
 
prepare() - Method in class org.simBio.bio.terashima_et_al_2006.current.potassium.IKs
set permeabilityNa using the ratio
prepare() - Method in class org.simBio.bio.terashima_et_al_2006.experiment.StepChanger
 
prepare() - Method in class org.simBio.bio.terashima_et_al_2006.experiment.StepChanger2
 
prepare() - Method in class org.simBio.bio.terashima_et_al_2006.experiment.TonicityChange
 
prepare() - Method in class org.simBio.bio.terashima_et_al_2006.experiment.VolumeRatio
Keep initial volume.
prepare() - Method in class org.simBio.bio.terashima_et_al_2006.function.Tonicity
 
prepare() - Method in class org.simBio.bio.terashima_et_al_2006.function.TotalVolume
Keep initial volume.
prepare() - Method in class org.simBio.core.Component
prepare for integration.
prepare() - Method in class org.simBio.core.Conductor
initialization for calculation.
prepare() - Method in class org.simBio.core.integrator.RungeKutta
y_nの値の一時保管
prepare(double, double, double, double) - Method in class org.simBio.core.integrator.RungeKuttaList
 
prepare() - Method in class org.simBio.core.Link
if parent Composite has a public double Field of the same name, set value of the Parameter linked.
prepare() - Method in class org.simBio.core.Parameter
親が自分と同じ名前のpublic doubleを持っていれば、自分の値を設定する。
prepare(double, double, double, double) - Method in class org.simBio.core.VariableList
call all Euler's start()
dt controlの閾値を設定し、全てのVariableのstart()を呼び出す。
prepare() - Method in class org.simBio.sim.analyzer.csv.ALaCarte
get targets to the list.
prepare() - Method in class org.simBio.sim.analyzer.csv.CsvMaker
Open csv file, write labels by MakeLabelLine().
prepare() - Method in class org.simBio.sim.analyzer.csv.keep.ParamEvalKeeper
set parameter number.
prepare() - Method in class org.simBio.sim.analyzer.csv.keep.TimeSeriesKeeper
 
prepare() - Method in class org.simBio.sim.analyzer.csv.result.ALaCarte
set targets to the list
書き出す対象をlistに登録。
prepare() - Method in class org.simBio.sim.analyzer.graph.AbstractGraph
Set link to the targets.
prepare() - Method in class org.simBio.sim.analyzer.graph.Axis
Set whether to display the plot label or not and set the pattern of the label number format. The display range formats up to single figures if it's below 0.1-10 decimal places ,if it's 10-1000,the integer region,apart from that,every 3 decimal places. To set a specific number value format, please define the pattern in xml, in the axis, with <component name="pattern" initial_value="#.#"/> etc. Please refer to DecimalFormat in the Javadoc for more information about the format.
prepare() - Method in class org.simBio.sim.analyzer.graph.BasicGraph
 
prepare() - Method in class org.simBio.sim.analyzer.graph.Graph
 
prepare() - Method in class org.simBio.sim.analyzer.graph.simple.Axis
set flag is plot label and set pattern of number format
軸ラベルを表示するか否か及びラベル数値フォーマット形式を設定する。 表示範囲が0.1-10なら小数点以下一桁まで、10-1000なら整数部位、 それ以外なら3桁ごとの指数形式でフォーマットします。 特定の数値フォーマットを設定するには、xml上でaxisの中に <component name="pattern" initial_value="#.#" /> 等とpatternを定義してください。 フォーマットの書式はDecimalFormatのJavadocを参照してください。
prepare() - Method in class org.simBio.sim.analyzer.graph.simple.AxisX
calculate scaling factor
prepare() - Method in class org.simBio.sim.analyzer.graph.simple.AxisXFix
calculate scaling factor
prepare() - Method in class org.simBio.sim.analyzer.graph.simple.AxisY
calculate scaling factor
prepare() - Method in class org.simBio.sim.analyzer.graph.simple.Graph
set link to the targets.
prepare() - Method in class org.simBio.sim.analyzer.graph.simple.RelationGraph
set link to the targets.
prepare() - Method in class org.simBio.sim.analyzer.graph.Viewer
 
prepare() - Method in class org.simBio.sim.analyzer.measure.AbstractMeasure
 
prepare() - Method in class org.simBio.sim.analyzer.measure.Amplitude
 
prepare() - Method in class org.simBio.sim.analyzer.measure.AmplitudeInCycle
 
prepare() - Method in class org.simBio.sim.analyzer.measure.APD
 
prepare() - Method in class org.simBio.sim.analyzer.measure.LeadPotential
 
prepare() - Method in class org.simBio.sim.analyzer.measure.PeakDetect
 
prepare() - Method in class org.simBio.sim.analyzer.measure.Sum
 
prepare() - Method in class org.simBio.sim.analyzer.measure.Vmax
 
prepare() - Method in class org.simBio.sim.analyzer.measure.VmaxTime
 
prepare() - Method in class org.simBio.sim.analyzer.StopWatch
 
prepareGetRange(long, long, int) - Method in class org.simBio.sim.analyzer.graph.results.TimeSeriesValues
指定した系列、インデックス範囲のデータを、キャッシュに読み込む.
prepareLegend(Graphics2D, Rectangle, AttributeString[]) - Method in interface org.simBio.sim.analyzer.graph.plot.IPlot
凡例描画の準備を行う.
prepareLegend(Graphics2D, Rectangle, AttributeString[]) - Method in class org.simBio.sim.analyzer.graph.plot.PlotDisplay
 
prepareLegend(Graphics2D, Rectangle, AttributeString[]) - Method in class org.simBio.sim.analyzer.graph.plot.PlotPrinter
 
prepareRepaint() - Method in class org.simBio.sim.analyzer.graph.AbstractGraph
 
prepareRepaint() - Method in class org.simBio.sim.analyzer.graph.Axis
When a region of a graph changes, this method is called before doRepaint().
prepareRepaint() - Method in class org.simBio.sim.analyzer.graph.Viewer
 
prepareRepaint() - Method in class org.simBio.sim.analyzer.VisualizeAnalyzer
再描画を準備する.
prepareTitle(Graphics2D, Rectangle, AttributeString) - Method in interface org.simBio.sim.analyzer.graph.plot.IPlot
タイトル描画の準備を行う.
prepareTitle(Graphics2D, Rectangle, AttributeString) - Method in class org.simBio.sim.analyzer.graph.plot.PlotDisplay
 
prepareTitle(Graphics2D, Rectangle, AttributeString) - Method in class org.simBio.sim.analyzer.graph.plot.PlotPrinter
 
PressureToConcentration - Class in org.simBio.bio.matsuoka_et_al_2004.function
calculation of concentration of gas-molecule from partial pressure.
PressureToConcentration() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.function.PressureToConcentration
 
previous - Variable in class org.simBio.bio.function.Analytic2state
 
print(Graphics, PageFormat, int) - Method in class org.simBio.sim.gui.GUI.JPrintablePanel
 
print(JComponent, String) - Static method in class org.simBio.sim.gui.PrintGraph
 
printAxises(Graphics2D, IPlot) - Method in class org.simBio.sim.analyzer.graph.AbstractGraph
Initialize graph area, and draw axes and grids.
printBackground(Graphics2D, IPlot) - Method in class org.simBio.sim.analyzer.graph.AbstractGraph
Draw background.
printComponent(Graphics) - Method in class org.simBio.sim.analyzer.graph.AbstractGraph
Performs drawing for printing the Graph.
printComponent(Graphics) - Method in interface org.simBio.sim.analyzer.graph.IViewer
 
printComponent(Graphics) - Method in class org.simBio.sim.analyzer.graph.simple.Viewer
 
printComponent(Graphics) - Method in class org.simBio.sim.analyzer.graph.Viewer
Carries out drawing for Viewer printing.
printComponent(Graphics) - Method in class org.simBio.sim.gui.GUI.JPrintablePanel
 
printGraph(Graphics2D, IPlot) - Method in class org.simBio.sim.analyzer.graph.AbstractGraph
Draw graph.
printGraph(Graphics2D, IPlot) - Method in class org.simBio.sim.analyzer.graph.BasicGraph
 
PrintGraph - Class in org.simBio.sim.gui
グラフ印刷を行う.
PrintGraph() - Constructor for class org.simBio.sim.gui.PrintGraph
 
printLegend(Graphics2D, IPlot) - Method in class org.simBio.sim.analyzer.graph.AbstractGraph
Draw legend.
printLog(String) - Static method in class org.simBio.tools.remote.CommandServerUtil
ログを出力する
printLog(Exception) - Static method in class org.simBio.tools.remote.CommandServerUtil
エラーログを出力する
Probability - Class in org.simBio.core.integrator
Keep the value between 0 and 1.
Probability() - Constructor for class org.simBio.core.integrator.Probability
 
process(Request, JavaSpace, Worker) - Method in interface org.simBio.sim.js.Processor
 
process(Request, JavaSpace, Worker) - Method in class org.simBio.sim.js.ProcessorImpl
 
Processing - Class in org.simBio.sim.js.entry
Processing
Processing() - Constructor for class org.simBio.sim.js.entry.Processing
 
Processing(WorkerId, String, String) - Constructor for class org.simBio.sim.js.entry.Processing
 
Processing(String) - Constructor for class org.simBio.sim.js.entry.Processing
 
processingInstruction(String, String) - Method in class org.simBio.serialize.xml.LogSax2
Reports processing instruction.
Processor - Interface in org.simBio.sim.js
Processor
ProcessorImpl - Class in org.simBio.sim.js
Default processor of the job requested.
ProcessorImpl() - Constructor for class org.simBio.sim.js.ProcessorImpl
 
processWindowEvent(WindowEvent) - Method in class org.simBio.sim.analyzer.graph.OnScreen
Decrement the number of active windows, when this window is closed.
Product - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.RedoxPotential
product and substrate concentrations of reaction
propertyFrameConfig - Static variable in class org.simBio.sim.gui.Constant
プロパティファイルのJFrame設定のプレフィックス
PropertyManager - Class in org.simBio.tools.remote
Property Manager
PropertyManager - Class in org.simBio.util
Property Manager
propertyToolbarOrder - Static variable in class org.simBio.sim.gui.Constant
プロパティファイルのツールバー順のプレフィックス
propertyTreeTableConfig - Static variable in class org.simBio.sim.gui.Constant
プロパティファイルのJTreeTable設定のプレフィックス
protocol - Variable in class org.simBio.sim.dm.ProtocolParser
 
ProtocolParser - Class in org.simBio.sim.dm
Protocol XML-file parser.
ProtocolParser(InputStream) - Constructor for class org.simBio.sim.dm.ProtocolParser
 
ProtocolParser(Document) - Constructor for class org.simBio.sim.dm.ProtocolParser
 
Proton - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.Acidity
 
Proton - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.enzyme.CK
proton concentration in cytosol
ProtonLeak - Class in org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter
Proton leak from cytosol to intremitochondoria.
ProtonLeak() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter.ProtonLeak
 
pRP - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL
PR state probability for voltage-dependent gate
pRP - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
PR state probability for voltage-dependent gate
pRP - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaL
PR state probability for voltage-dependent gate
pRP - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.INa
RP state probability for voltage-dependent gate
pRP - Variable in class org.simBio.bio.sarai_et_al_2006.current.cf.ICaL
PR state probability for voltage-dependent gate
pRP - Variable in class org.simBio.bio.sarai_noma_2004.fourState.ODE
 
pRP - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.ICaL
PR state probability for voltage-dependent gate
pRP - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ICaL
PR state probability for voltage-dependent gate
pRP - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.INa
RP state probability for voltage-dependent gate
Pspm - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.IK1
the probability of being in the SPM block state
pU - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL
U state probability for calcium-dependent gate
pU - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
U state probability for calcium-dependent gate
pU - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaL
U state probability for calcium-dependent gate
pU - Variable in class org.simBio.bio.sarai_et_al_2006.current.cf.ICaL
U state probability for calcium-dependent gate
pU - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.ICaL
U state probability for Ca2+-dependent gate
pU - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ICaL
U state probability for calcium-dependent gate
pUCa - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL
UCa state probability for calcium-dependent gate
pUCa - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
UCa state probability for calcium-dependent gate
pUCa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaL
UCa state probability for calcium-dependent gate
pUCa - Variable in class org.simBio.bio.sarai_et_al_2006.current.cf.ICaL
UCa state probability for calcium-dependent gate
pUCa - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.ICaL
UCa state probability for Ca2+-dependent gate
pUCa - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ICaL
UCa state probability for calcium-dependent gate
PureKchannel - Class in org.simBio.bio.matsuoka_et_al_2003.current.potassium
calculate pure potassium channel current.
PureKchannel() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.potassium.PureKchannel
 
PureKchannel - Class in org.simBio.bio.terashima_et_al_2006.current.potassium
calculate pure potassium channel current.
PureKchannel() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.potassium.PureKchannel
 
putRawData(byte[], String) - Static method in class org.simBio.sim.js.Utils
 
pX - Variable in class org.simBio.bio.oka_et_al_2006.function.kinetics.RateConstantCaGate
p[X].

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