org.simBio.bio.matsuoka_et_al_2003.current.cf
Class CfChannel

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter
                      org.simBio.bio.matsuoka_et_al_2003.current.cf.CfChannel

All Implemented Interfaces:

Node

Direct Known Subclasses:

ICaL, ICaL, ICaT, Iha, IKpl, IKs, ILCCa, INa, Ist, Ito

public class CfChannel
extends MembraneTransporter

calculate current component of Na, K, Ca ion according to the constant field theory.

Version:

$Revision: 1.2 $

Author:

Nobuaki Sarai

See Also:

Matsuoka et al, 2003,
explanation (Japanese, WORD doc),
ICab XML example, explanation (Japanese, WORD doc),
IbNSC XML example, explanation (Japanese, WORD doc)

Field Summary

Node	constantFieldCa Ca2+ flux calculated by constant field theory [mM]
Node	constantFieldK K+ flux calculated by constant field theory [mM]
Node	constantFieldNa Na+ flux calculated by constant field theory [mM]
double	permeabilityCa channel permeability for Ca2+
double	permeabilityK channel permeability for K+ [pA/pF/mM][pA/pF/mM]
double	permeabilityNa channel permeability for Na+ [pA/pF/mM]
protected double	pOpen open probability

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

cCa, CCa, cK, CK, cNa, CNa, current, currentCa, currentK, currentNa, total

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

CfChannel()

Method Summary

protected void

calculate(double t) add current to Compartment.

Methods inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

prepare

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

constantFieldCa

public Node constantFieldCa

Ca2+ flux calculated by constant field theory [mM]

constantFieldK

public Node constantFieldK

K+ flux calculated by constant field theory [mM]

constantFieldNa

public Node constantFieldNa

Na+ flux calculated by constant field theory [mM]

permeabilityNa

public double permeabilityNa

channel permeability for Na+ [pA/pF/mM]

permeabilityK

public double permeabilityK

channel permeability for K+ [pA/pF/mM][pA/pF/mM]

permeabilityCa

public double permeabilityCa

channel permeability for Ca2+

pOpen

protected double pOpen

open probability

Constructor Detail

CfChannel

public CfChannel()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: MembraneTransporter

add current to Compartment.

Overrides:

calculate in class MembraneTransporter

Parameters:

t - time

See Also:

Reactor.calculate(double)