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java.lang.Object org.simBio.core.Component org.simBio.core.Parameter org.simBio.core.Composite org.simBio.core.Reactor org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaK
public class INaK
Sodium Potassium pump current.
Field Summary | |
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Node |
ATP
concentration of ATP[mM] |
Node |
ATPconsumingRate
rate of ATP consumption |
Node |
ATPconsumption
ATP consumption[mM] |
Node |
dATP
differential ATP [mM/msec] |
protected double |
dATP_
|
double |
F
Faraday constant default value is 96.4867[C/mmol] |
Node |
Ki
concentration of intracellular Potassium[mM] |
double |
KmATP
hydrolysis coefficient of ATP |
double |
KmKi
dissociation constant for intracellular Potassium[mM] |
double |
KmKo
dissociation constant for extracellular Potassium[mM] |
double |
KmNai
dissociation constant for intracellular Sodium[mM] |
double |
KmNao
dissociation constant for extracellular Sodium[mM] |
Node |
Ko
concentration of extracellular Potassium[mM] |
Node |
Nai
concentration of intracellular Sodium[mM] |
Node |
Nao
concentration of extracellular Sodium[mM] |
double |
nHK
Hill coefficient of Potassium |
double |
nHNa
Hill coefficient of Sodium |
double |
R
gas constant default value is 8.3143[C*mV/K/mmol] |
double |
ramda
relative depth of access channel |
Node |
T
absolute temperature[K] |
double |
t0
startTime of calculation |
Node |
Vi
cell volume accessible for ion diffusion[um^3] |
Node |
Vm
membrane potential of cell[mV] |
Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier |
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amplitude, Cm, E1A, E1B, E2A, E2B, gate, k1, k2, k3, k4, stoichiometryCa, stoichiometryK, stoichiometryNa |
Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter |
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cCa, CCa, cK, CK, cNa, CNa, current, currentCa, currentK, currentNa, total |
Fields inherited from class org.simBio.core.Parameter |
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value |
Constructor Summary | |
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INaK()
|
Method Summary | |
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protected void |
calculate(double t)
calculate total charge movement using reduced 2 state model 2 state gateを用いて電流を計算する |
protected void |
prepare()
construct null current |
Methods inherited from class org.simBio.core.Composite |
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accept, getLink, getNode, getNodesIterator, getNodesSize |
Methods inherited from class org.simBio.core.Parameter |
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addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField |
Methods inherited from class org.simBio.core.Component |
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addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface org.simBio.core.Node |
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addDydt, addValue, getValue, setValue |
Field Detail |
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public Node Vi
public Node Ki
public Node Ko
public Node Nai
public Node Nao
public Node Vm
public Node ATP
public Node ATPconsumption
public Node ATPconsumingRate
public double t0
public double R
public Node T
public double F
public double KmATP
public double KmNao
public double KmNai
public double KmKo
public double KmKi
public double nHNa
public double nHK
public double ramda
public Node dATP
protected double dATP_
Constructor Detail |
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public INaK()
Method Detail |
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protected void prepare()
MembraneTransporter
prepare
in class MembraneTransporter
Component.prepare()
protected void calculate(double t)
Carrier
calculate
in class Carrier
t
- time
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