A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

I

I_K - Class in org.simBio.bio.hodgkin_huxley_1952

Potassium Channel.

I_K() - Constructor for class org.simBio.bio.hodgkin_huxley_1952.I_K

I_K - Variable in class org.simBio.bio.hodgkin_huxley_1952.Membrane

Potassium current (microA_per_cm2)

I_L - Class in org.simBio.bio.hodgkin_huxley_1952

leak component.

I_L() - Constructor for class org.simBio.bio.hodgkin_huxley_1952.I_L

I_L - Variable in class org.simBio.bio.hodgkin_huxley_1952.Membrane

Leak (Chloride) current (microA_per_cm2)

I_Na - Class in org.simBio.bio.hodgkin_huxley_1952

Sodium channel.

I_Na() - Constructor for class org.simBio.bio.hodgkin_huxley_1952.I_Na

I_Na - Variable in class org.simBio.bio.hodgkin_huxley_1952.Membrane

Sodium current (microA_per_cm2)

I_stim - Class in org.simBio.bio.hodgkin_huxley_1952

Stimulus current.

I_stim() - Constructor for class org.simBio.bio.hodgkin_huxley_1952.I_stim

I_stim - Variable in class org.simBio.bio.hodgkin_huxley_1952.Membrane

Stimulus current (microA_per_cm2)

IbCa - Class in org.simBio.bio.tenTusscher_et_al_2004.current

Background Ca²⁺ current.

IbCa() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.IbCa

IbNa - Class in org.simBio.bio.tenTusscher_et_al_2004.current

Background Na⁺ current.

IbNa() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.IbNa

iCa - Variable in class org.simBio.bio.faber_rudy_2000.current.RyR

ICa - Class in org.simBio.bio.tenTusscher_et_al_2004.current

L-type Ca²⁺ current.

ICa() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.ICa

ICab - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

ICab - Class in org.simBio.bio.kurata_et_al_2005.current

ICab() - Constructor for class org.simBio.bio.kurata_et_al_2005.current.ICab

ICab - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Release

ICaL - Class in org.simBio.bio.faber_rudy_2000.current

L-type Calcium channnel.

ICaL() - Constructor for class org.simBio.bio.faber_rudy_2000.current.ICaL

ICaL - Class in org.simBio.bio.himeno_et_al_2008

L-type Ca channel.

ICaL() - Constructor for class org.simBio.bio.himeno_et_al_2008.ICaL

ICaL - Class in org.simBio.bio.kurata_et_al_2005.current

ICaL() - Constructor for class org.simBio.bio.kurata_et_al_2005.current.ICaL

ICaL - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Release

ICaL - Class in org.simBio.bio.kuzumoto_et_al_2007.current.cf

L-type Ca channel.

ICaL() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL

ICaL - Class in org.simBio.bio.matsuoka_et_al_2003.current.cf

L-type Ca channel.

ICaL() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaL

ICaL - Variable in class org.simBio.bio.noble_et_al_1998.Model

ICaL - Class in org.simBio.bio.sarai_et_al_2003

2次元表示のX軸で負の値が用いれないようなので、シフトさせる。 0から20に変化させるようXMLで指定したとき、実際には-10から10になる。

ICaL() - Constructor for class org.simBio.bio.sarai_et_al_2003.ICaL

ICaL - Class in org.simBio.bio.sarai_et_al_2006.current.cf

L-type Ca channel with amplitude factor.

ICaL() - Constructor for class org.simBio.bio.sarai_et_al_2006.current.cf.ICaL

ICaL - Class in org.simBio.bio.takeuchi_et_al_2006.current

L-type Ca channel.

ICaL() - Constructor for class org.simBio.bio.takeuchi_et_al_2006.current.ICaL

ICaL - Class in org.simBio.bio.terashima_et_al_2006.current.cf

L-type Ca channel.

ICaL() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.cf.ICaL

ICaLCa - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

ICaLK - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

ICaLNa - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

ICanvas - Interface in org.simBio.sim.analyzer.graph.simple

draw axis and plot point to the canvas
SwingもしくはSWTに依存せず画面描画するためのインターフェイス。

ICaPump - Class in org.simBio.bio.kuzumoto_et_al_2007.current.carrier

Ca pump on network SR.

ICaPump() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.ICaPump

ICaPump - Class in org.simBio.bio.matsuoka_et_al_2003.current.carrier

Ca pump on network SR.

ICaPump() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.carrier.ICaPump

ICaPump - Class in org.simBio.bio.matsuoka_et_al_2004.current.carrier

Ca pump on network SR.

ICaPump() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.current.carrier.ICaPump

ICaT - Class in org.simBio.bio.faber_rudy_2000.current

T-Type Calcium Channel.

ICaT() - Constructor for class org.simBio.bio.faber_rudy_2000.current.ICaT

ICaT - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

ICaT - Class in org.simBio.bio.matsuoka_et_al_2003.current.cf

T-type Ca channel.

ICaT() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaT

ICaT - Class in org.simBio.bio.terashima_et_al_2006.current.cf

T-type Ca channel.

ICaT() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.cf.ICaT

ICFTR - Class in org.simBio.bio.kuzumoto_et_al_2007.current.cf

Cystic fibrosis transmembrane conductance regulator Cl^- channel current.

ICFTR() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICFTR

ICFTR - Class in org.simBio.bio.terashima_et_al_2006.current.cf

Cystic fibrosis transmembrane conductance regulator Cl- channel current.

ICFTR() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.cf.ICFTR

IClb - Class in org.simBio.bio.terashima_et_al_2006.current.cf

IClb() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.cf.IClb

ICollection - Interface in org.simBio.sim.ps

パラメータ空間のデータベース。

ICollector - Interface in org.simBio.sim.ps

Collect parameters, evaluations, time series, result XML.

iconDir - Static variable in class org.simBio.sim.gui.Constant

アイコン用のディレクトリ文字列(リソース内)

IEvals - Interface in org.simBio.sim.ps

評価値を持っているマーク。

Iext - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

ignorableWhitespace(char[], int, int) - Method in class org.simBio.serialize.xml.LogSax2

Reports ignorable whitespace in element content.

Iha - Class in org.simBio.bio.himeno_et_al_2008

Iha.

Iha() - Constructor for class org.simBio.bio.himeno_et_al_2008.Iha

Iha - Class in org.simBio.bio.matsuoka_et_al_2003.current.cf

Hyperpolarization-activated cation current, I_ha.

Iha() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.cf.Iha

Iha - Class in org.simBio.bio.terashima_et_al_2006.current.cf

Iha

Iha() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.cf.Iha

IK1 - Class in org.simBio.bio.faber_rudy_2000.current

time indipendent potassium channel

IK1() - Constructor for class org.simBio.bio.faber_rudy_2000.current.IK1

IK1 - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

IK1 - Class in org.simBio.bio.kurata_et_al_2005.current

IK1() - Constructor for class org.simBio.bio.kurata_et_al_2005.current.IK1

IK1 - Class in org.simBio.bio.kuzumoto_et_al_2007.current

Inward rectifired K current, Yan and Ishihara (2005) model.

IK1() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.current.IK1

IK1 - Class in org.simBio.bio.matsuoka_et_al_2003.current.potassium

Inward rectifired K current, Ishihara model.

IK1() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.potassium.IK1

IK1 - Class in org.simBio.bio.tenTusscher_et_al_2004.current

Inward rectifier K⁺ current.

IK1() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.IK1

IK1 - Class in org.simBio.bio.terashima_et_al_2006.current.potassium

Inward rectifired K current, Ishihara model.

IK1() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.potassium.IK1

IKACh - Class in org.simBio.bio.himeno_et_al_2008

ACh channel.

IKACh() - Constructor for class org.simBio.bio.himeno_et_al_2008.IKACh

IKACh - Class in org.simBio.bio.matsuoka_et_al_2003.current.potassium

ACh channel Iijima

IKACh() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.potassium.IKACh

IKATP - Class in org.simBio.bio.matsuoka_et_al_2003.current.potassium

ATP-sensitive potassium current.

IKATP() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.potassium.IKATP

IKATP - Class in org.simBio.bio.terashima_et_al_2006.current.potassium

ATP-sensitive potassium current.

IKATP() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.potassium.IKATP

IKeys - Interface in org.simBio.sim.ps

変化させているパラメータのリストを持っているマーク。

IKpl - Class in org.simBio.bio.faber_rudy_2000.current

plateau potassium channel

IKpl() - Constructor for class org.simBio.bio.faber_rudy_2000.current.IKpl

IKpl - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

IKpl - Class in org.simBio.bio.matsuoka_et_al_2003.current.cf

non-specific, voltage-dependent outward current (plateau current).

IKpl() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.cf.IKpl

IKpl - Class in org.simBio.bio.terashima_et_al_2006.current.cf

non-specific, voltage-dependent outward current (plateau current).

IKpl() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.cf.IKpl

IKr - Class in org.simBio.bio.faber_rudy_2000.current

Rapidly Activating Potassium channel

IKr() - Constructor for class org.simBio.bio.faber_rudy_2000.current.IKr

IKr - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

IKr - Class in org.simBio.bio.kurata_et_al_2005.current

IKr() - Constructor for class org.simBio.bio.kurata_et_al_2005.current.IKr

IKr - Class in org.simBio.bio.matsuoka_et_al_2003.current.potassium

Delayed rectifier K+ current channel.

IKr() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.potassium.IKr

IKr - Variable in class org.simBio.bio.noble_et_al_1998.Model

IKr - Class in org.simBio.bio.tenTusscher_et_al_2004.current

Rapid delayed rectifier current : IKr * @author Keiichi Asakura

IKr() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.IKr

IKr - Class in org.simBio.bio.terashima_et_al_2006.current.potassium

Delayed rectifier K⁺ current channel.

IKr() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.potassium.IKr

IKs - Class in org.simBio.bio.faber_rudy_2000.current

slow time dependent potassium channel

IKs() - Constructor for class org.simBio.bio.faber_rudy_2000.current.IKs

IKs - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

IKs - Class in org.simBio.bio.himeno_et_al_2008

Delayed rectifier K⁺ current, slow component (pA).

IKs() - Constructor for class org.simBio.bio.himeno_et_al_2008.IKs

IKs - Class in org.simBio.bio.kurata_et_al_2005.current

IKs() - Constructor for class org.simBio.bio.kurata_et_al_2005.current.IKs

IKs - Class in org.simBio.bio.kuzumoto_et_al_2007.current.cf

Delayed rectifier K⁺ current, slow component (pA).

IKs() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.current.cf.IKs

IKs - Class in org.simBio.bio.matsuoka_et_al_2003.current.potassium

Delayd rectifier K+ current, slow component (pA).

IKs() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.potassium.IKs

IKs - Variable in class org.simBio.bio.noble_et_al_1998.Model

IKs - Class in org.simBio.bio.tenTusscher_et_al_2004.current

Slow delayed rectifier current.

IKs() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.IKs

IKs - Class in org.simBio.bio.terashima_et_al_2006.current.potassium

Delayed rectifier K⁺ current, slow component (pA).

IKs() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.potassium.IKs

ILCCa - Class in org.simBio.bio.matsuoka_et_al_2003.current.cf

Calcium activated Non-Selective Cation current.

ILCCa() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.cf.ILCCa

ILCCa - Class in org.simBio.bio.terashima_et_al_2006.current.cf

Calcium activated Non-Selective Cation current.

ILCCa() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.cf.ILCCa

Ileak - Variable in class org.simBio.bio.tenTusscher_et_al_2004.complex.SR

importData(JComponent, Transferable) - Method in class org.simBio.sim.gui.toolKit.dndmenu.DnDTransferHandler

ドロップ用:ツールバー設定用のDataFlavorがドラッグされた場合のみ、ドロップ処理を行い、true を返す

in - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.ConstantField

intracellular ion concentration (mM)

in - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Current

internal ion concentration (mM)

in - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.ReversalPotential

intracellular ion concentration (mM)

in - Variable in class org.simBio.bio.tenTusscher_et_al_2004.function.Current

INa - Class in org.simBio.bio.faber_rudy_2000.current

fast sodium channel

INa() - Constructor for class org.simBio.bio.faber_rudy_2000.current.INa

INa - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

INa - Class in org.simBio.bio.kurata_et_al_2005.current

INa() - Constructor for class org.simBio.bio.kurata_et_al_2005.current.INa

INa - Class in org.simBio.bio.matsuoka_et_al_2003.current.cf

Na current, Ishihara model.

INa() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.cf.INa

INa - Class in org.simBio.bio.tenTusscher_et_al_2004.current

Fast Na currnet : INa * @author Keiichi Asakura

INa() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.INa

INa - Class in org.simBio.bio.terashima_et_al_2006.current.cf

Na current, Ishihara model.

INa() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.cf.INa

INab - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

INab - Class in org.simBio.bio.kurata_et_al_2005.current

INab() - Constructor for class org.simBio.bio.kurata_et_al_2005.current.INab

INab - Class in org.simBio.bio.terashima_et_al_2006.current.cf

background Sodium current.

INab() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.cf.INab

INaCa - Class in org.simBio.bio.faber_rudy_2000.current

Sodium Calcium exchanger

INaCa() - Constructor for class org.simBio.bio.faber_rudy_2000.current.INaCa

INaCa - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

INaCa - Class in org.simBio.bio.kurata_et_al_2005.current

INaCa() - Constructor for class org.simBio.bio.kurata_et_al_2005.current.INaCa

INaCa - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Release

INaCa - Class in org.simBio.bio.kuratomi_et_al_2003.current.carrier

Na/Ca exchanger.

INaCa() - Constructor for class org.simBio.bio.kuratomi_et_al_2003.current.carrier.INaCa

INaCa - Class in org.simBio.bio.matsuoka_et_al_2003.current.carrier

Na/Ca exchanger.

INaCa() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaCa

INaCa - Class in org.simBio.bio.takeuchi_et_al_2006.current

Na⁺/Ca²⁺ exchanger.

INaCa() - Constructor for class org.simBio.bio.takeuchi_et_al_2006.current.INaCa

INaCa - Class in org.simBio.bio.tenTusscher_et_al_2004.current.carrier

Na+ / Ca2+ exchanger : INaCa * @author Asakurai

INaCa() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.carrier.INaCa

inactivation - Variable in class org.simBio.bio.himeno_et_al_2008.Ist

gate variable

inActivation - Variable in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.INaCa

inactivation gate

inactivation - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaT

open probability of inactivation gate

inactivation - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.Ist

gate variable

inactivation - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ICaT

open probability of inactivation gate

inactivation - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.Ist

inActivation1 - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.INaCa

I1 probability for inactivation gate 1 (Na-dependent)

inActivation2 - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.INaCa

I2 probability for inactivation gate 2 (Ca-dependent)

inactive - Variable in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.Carrier

probability at inactivated state.

INaK - Class in org.simBio.bio.faber_rudy_2000.current

sodium potassium pump current

INaK() - Constructor for class org.simBio.bio.faber_rudy_2000.current.INaK

INaK - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

INaK - Class in org.simBio.bio.kurata_et_al_2005.current

INaK() - Constructor for class org.simBio.bio.kurata_et_al_2005.current.INaK

INaK - Class in org.simBio.bio.kuzumoto_et_al_2007.current.carrier

Sodium Potassium pump current.

INaK() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.INaK

INaK - Class in org.simBio.bio.matsuoka_et_al_2003.current.carrier

Sodium Potassium pump current.

INaK() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaK

INaK - Class in org.simBio.bio.matsuoka_et_al_2004.current.carrier

Sodium Potassium pump current.

INaK() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.current.carrier.INaK

INaK - Class in org.simBio.bio.tenTusscher_et_al_2004.current.carrier

Na+/K+ pump current * @author Asakura

INaK() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.carrier.INaK

INaK - Class in org.simBio.bio.terashima_et_al_2006.current.carrier

Calculate Ouabain effect on amplitude of INaK.

INaK() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.carrier.INaK

INaK - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

INaKmax - Variable in class org.simBio.bio.kurata_et_al_2005.current.INaK

inConstructor() - Method in class org.simBio.util.taglets.Languages

increment() - Method in class org.simBio.sim.js.entry.Index

IndependentGate - Class in org.simBio.bio.oka_et_al_2006.function.kinetics

Calculate the mean open probability of the gating model consisting of multiple independent gates.

IndependentGate() - Constructor for class org.simBio.bio.oka_et_al_2006.function.kinetics.IndependentGate

Index - Class in org.simBio.sim.js.entry

Index

Index() - Constructor for class org.simBio.sim.js.entry.Index

Index(String, String) - Constructor for class org.simBio.sim.js.entry.Index

Index(String, String, Integer) - Constructor for class org.simBio.sim.js.entry.Index

indexCurrent - Variable in class org.simBio.sim.analyzer.graph.results.TimeSeriesValues

indexIteration_ - Variable in class org.simBio.sim.dm.exchange.Exchanger

IndexNameExchanger - Class in org.simBio.sim.dm.exchange

Indexで名前をつけるクラス。

IndexNameExchanger(Node) - Constructor for class org.simBio.sim.dm.exchange.IndexNameExchanger

InextensibleLength - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme.CrossBridgeNL

inField() - Method in class org.simBio.util.taglets.Languages

infinity - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Diffusion

infinity - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Diffusion_a

infinity - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Diffusion_t

Inhib1 - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB

inhibitor-1 concentration (mM)

Inhib1p - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB

phosphorylated inhibitor-1 concentration (mM)

Inhib1ptot - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB

phosphorylated inhibitor-1 total (Inhib1p + PP1_Inhib) concentration (mM)

Inhib1tot - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB

total inhibitor-1 concentration (mM)

init(int, int) - Method in class org.simBio.sim.analyzer.graph.plot.AbstractPlot

init(int, int) - Method in interface org.simBio.sim.analyzer.graph.plot.IPlot

初期化を行う.

init(int, int) - Method in class org.simBio.sim.analyzer.graph.plot.PlotDisplay

init(int, int) - Method in class org.simBio.sim.analyzer.graph.plot.PlotPrinter

init(double) - Method in class org.simBio.sim.analyzer.graph.results.TimeSeriesValues

計算結果バッファを初期化する.

init() - Method in interface org.simBio.sim.ps.ICollector

結果を溜める準備をする。

init() - Method in class org.simBio.sim.ps.ParameterSpace

initial - Variable in class org.simBio.bio.matsuoka_et_al_2004.exp.Anoxia

initial - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.chemical.CN

rate constant of complex IV

initial - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.chemical.FCCP

rate constant of proton leak

INITIAL_VALUE - Static variable in class org.simBio.core.Initializer

attribute name of the initial value

initialize() - Method in class org.simBio.sim.gui.toolKit.dndmenu.DnDAction

初期化処理を行う。 無名クラスとして実装した場合に、初期化を行うためのメソッド

Initializer - Class in org.simBio.core

Keep values to initialize Component.

inMethod() - Method in class org.simBio.util.taglets.Languages

inOverview() - Method in class org.simBio.util.taglets.Languages

inPackage() - Method in class org.simBio.util.taglets.Languages

InstantCaBuffer - Class in org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca

instantaneous Ca buffer, iterative method.

InstantCaBuffer() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.InstantCaBuffer

integrate() - Method in class org.simBio.core.Conductor

integrate ODEs.

internal - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.Diffusion

internal concentration

internalEntityDecl(String, String) - Method in class org.simBio.serialize.xml.LogSax2

Logs an internal entity declaration

interval - Variable in class org.simBio.bio.faber_rudy_2000.function.Stimulus

interval - Variable in class org.simBio.bio.hodgkin_huxley_1952.I_stim

stimulus interval (milliS)

interval - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.pipette.Pipette

stimulus interval (msec)

interval - Variable in class org.simBio.bio.negroni_lascano_1996.Qrel

interval - Variable in class org.simBio.bio.sarai_noma_2004.VoltageClamp

interval - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.pipette.Pipette

stimulus interval (msec)

interval - Variable in class org.simBio.bio.terashima_et_al_2006.experiment.StepChanger

interval - Variable in class org.simBio.bio.terashima_et_al_2006.experiment.StepChanger2

interval - Variable in class org.simBio.sim.analyzer.csv.CsvMaker

interval - Variable in class org.simBio.sim.analyzer.graph.AbstractGraph

calculation result processing interval

interval - Variable in class org.simBio.sim.analyzer.graph.simple.Graph

time interval to plot

interval - Variable in class org.simBio.sim.analyzer.graph.simple.RelationGraph

interval - Variable in class org.simBio.sim.analyzer.measure.AbstractMeasure

interval - Variable in class org.simBio.sim.analyzer.measure.APD

interval - Variable in class org.simBio.sim.analyzer.measure.Vmax

inType() - Method in class org.simBio.util.taglets.Languages

IParamSpaceObserver - Interface in org.simBio.sim.ps

パラメータスペースが変化した通知を受ける。

IpCa - Class in org.simBio.bio.faber_rudy_2000.current

Sarcolemmal Ca Pump Current

IpCa() - Constructor for class org.simBio.bio.faber_rudy_2000.current.IpCa

IpCa - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

IpCa - Class in org.simBio.bio.kurata_et_al_2005.current

IpCa() - Constructor for class org.simBio.bio.kurata_et_al_2005.current.IpCa

IpCa - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Release

IpCa - Class in org.simBio.bio.tenTusscher_et_al_2004.current

Plateau Ca current.

IpCa() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.IpCa

IpCamax - Variable in class org.simBio.bio.kurata_et_al_2005.current.IpCa

IpK - Class in org.simBio.bio.tenTusscher_et_al_2004.current

Plateau K current.

IpK() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.IpK

IPlot - Interface in org.simBio.sim.analyzer.graph.plot

グラフ、描画対象（画面／プリンタ）毎の描画処理を行うためのインターフェイス.

IPlot.Item - Interface in org.simBio.sim.analyzer.graph.plot

タイトル／凡例描画用のオブジェクト

IPMCA - Class in org.simBio.bio.kuzumoto_et_al_2007.current.carrier

Ca pump on cell membrane.

IPMCA() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.IPMCA

IPMCA - Class in org.simBio.bio.sarai_et_al_2006.current.carrier

Ca pump on cell membrane.

IPMCA() - Constructor for class org.simBio.bio.sarai_et_al_2006.current.carrier.IPMCA

IPMCA_CCa - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

IReciever - Interface in org.simBio.sim.ps

Receive result data.

Irel - Variable in class org.simBio.bio.tenTusscher_et_al_2004.complex.SR

IResetBeforeCalc - Interface in org.simBio.core

Mark for Reactor to reset before calculation
計算開始時にクリアする必要のあるリアクターにつけるマーク。

IRyR - Class in org.simBio.bio.kuzumoto_et_al_2007.current

Calcium releasing channel on SR.

IRyR() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.current.IRyR

IRyR - Class in org.simBio.bio.matsuoka_et_al_2003.current.channel

Calcium releasing channel on SR.

IRyR() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.channel.IRyR

IRyR - Class in org.simBio.bio.takeuchi_et_al_2006.current

Calcium releasing channel on SR.

IRyR() - Constructor for class org.simBio.bio.takeuchi_et_al_2006.current.IRyR

IRyR - Class in org.simBio.bio.terashima_et_al_2006.current.channel

Calcium releasing channel on SR.

IRyR() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.channel.IRyR

isActive - Variable in class org.simBio.sim.analyzer.csv.CsvMaker

isCellEditable(EventObject) - Method in class org.simBio.sim.gui.CheckedJTree.CheckedJTreeCellRenderer

isDataFlavorSupported(DataFlavor) - Method in class org.simBio.sim.gui.toolKit.dndmenu.DnDTransferBean

isEnd(String) - Method in class org.simBio.tools.remote.process.AbstractAfterProcess

isEnd(String) - Method in class org.simBio.tools.remote.process.DefaultAfterProcess

isEnd(String) - Method in class org.simBio.tools.remote.process.WorkerStatus

isInlineTag() - Method in class org.simBio.util.taglets.Languages

Will return true since this is an inline tag.

isLoaded() - Method in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork

動作モードが読込中であるかどうか確認する。

isModified() - Method in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork

値が変更されているかどうか確認する。

isNamed(String) - Method in class org.simBio.core.Component

compare s with name
引数の文字列が、自分の名前と一致すればtrueを返す。

Iso - Variable in class org.simBio.bio.kuzumoto_et_al_2007.molecule.BetaAR_Gs

total ligand concentration

isOk() - Method in interface org.simBio.sim.analyzer.graph.plot.IPlot.Item

描画準備が出来ているかどうかを取得する.

isOk() - Method in class org.simBio.sim.analyzer.graph.plot.PlotPrinter.LegendItem

isOk() - Method in class org.simBio.sim.analyzer.graph.plot.PlotPrinter.TitleItem

IsometricContraction - Class in org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme

Isometric Contraction

IsometricContraction() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme.IsometricContraction

isOpened() - Method in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork

ファイルが開かれているかどうか確認する。

isOperated() - Method in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork

動作モードが演算後であるかどうか確認する。

isOperating() - Method in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork

動作モードが演算中であるかどうか確認する。

Isoprenaline - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.ICFTR

concentration of extracellular isoprenaline [uM]

IsotonicContraction - Class in org.simBio.bio.kuzumoto_et_al_2007.contraction

Calculation of half sarcomere length in isotonic experiments.

IsotonicContraction() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.contraction.IsotonicContraction

IsotonicContraction - Class in org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme

Isotonic Contraction

IsotonicContraction() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme.IsotonicContraction

IsotonicContraction - Class in org.simBio.bio.negroni_lascano_1996.exp

Calculate force equilibrated length.

IsotonicContraction() - Constructor for class org.simBio.bio.negroni_lascano_1996.exp.IsotonicContraction

isPlotEvals - Static variable in class org.simBio.sim.ps.view.AbstractPlot

flag to plot each evaluation

isPlotLabel - Variable in class org.simBio.sim.analyzer.graph.Axis

whether to display the label or not

isPlotLabel - Variable in class org.simBio.sim.analyzer.graph.simple.Axis

isPlots - Static variable in class org.simBio.sim.ps.view.PlotLouncher

Flag to plot PlotLine, PlotContour, PlotTimeSeries

isPrefixed(String) - Method in class org.simBio.core.Component

check name whether start with s or not
引数の文字列が、自分の名前の先頭と一致すればtrueを返す。

isRandomizer(InputStream) - Static method in class org.simBio.sim.dm.ParameterChanger

Check if the file is a randomizer or not.

isResizing() - Method in class org.simBio.sim.analyzer.graph.Viewer

Checks whether or not the screen is being redrawn.

isSelected(Object) - Method in interface org.simBio.sim.gui.CheckedJTreeModel

node にチェックが入っている場合は true を返します.

Ist - Class in org.simBio.bio.himeno_et_al_2008

Sustained inward current for pacemaker model.

Ist() - Constructor for class org.simBio.bio.himeno_et_al_2008.Ist

Ist - Class in org.simBio.bio.matsuoka_et_al_2003.current.cf

Sustained inward current for pacemaker model.

Ist() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.cf.Ist

Ist - Class in org.simBio.bio.sarai_et_al_2003

2次元表示のX軸で負の値が用いれないようなので、Vshiftをシフトさせる。 0から20に変化させるようXMLで指定したとき、実際には-10から10になる。

Ist() - Constructor for class org.simBio.bio.sarai_et_al_2003.Ist

Ist - Class in org.simBio.bio.terashima_et_al_2006.current.cf

Sustained inward current reversal potential of about +13 mV.

Ist() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.cf.Ist

Istim - Variable in class org.simBio.bio.noble_et_al_1998.Model

It - Variable in class org.simBio.sim.analyzer.measure.APD

It - Variable in class org.simBio.sim.analyzer.measure.Vmax

iteratorSelected() - Method in interface org.simBio.sim.gui.CheckedJTreeModel

選択されているNodeを繰り返し処理する反復子を返します.

ITimeSeries - Interface in org.simBio.sim.ps

時系列データを持っていることのマーク。

Ito - Class in org.simBio.bio.kurata_et_al_2005.current

Ito() - Constructor for class org.simBio.bio.kurata_et_al_2005.current.Ito

Ito - Class in org.simBio.bio.matsuoka_et_al_2003.current.cf

Transient outward current, Ito (pA)

Ito() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.current.cf.Ito

Ito - Class in org.simBio.bio.tenTusscher_et_al_2004.current

Transient outward current : Ito * @author Asakura

Ito() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.Ito

Ito - Class in org.simBio.bio.terashima_et_al_2006.current.cf

Transient outward current.

Ito() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.cf.Ito

Ito_endo - Class in org.simBio.bio.tenTusscher_et_al_2004.current

Transient outward current.

Ito_endo() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.current.Ito_endo

iTotal - Variable in class org.simBio.bio.faber_rudy_2000.current.RyR

itotal - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

iTotal - Variable in class org.simBio.sim.analyzer.measure.APDforSA2

総電流 (pA)

iTotal - Variable in class org.simBio.sim.analyzer.measure.HR

総電流 (pA)

Itotal - Variable in class org.simBio.sim.analyzer.measure.VmaxTime

total membrane current (pA)

itotalCa - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

itotalK - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

itotalNa - Variable in class org.simBio.bio.faber_rudy_2000.structure.Cell

Iup - Variable in class org.simBio.bio.tenTusscher_et_al_2004.complex.SR

iupbar - Variable in class org.simBio.bio.faber_rudy_2000.current.NSRLeak

iupbar - Variable in class org.simBio.bio.faber_rudy_2000.current.SRCA

iv - Variable in class org.simBio.sim.analyzer.graph.simple.RateGraph_KA

IViewer - Interface in org.simBio.sim.analyzer.graph

Enable both new graph and previous graph components to work.

IVRCC - Class in org.simBio.bio.terashima_et_al_2006.current.cf

volume-regulated Cl- current.

IVRCC() - Constructor for class org.simBio.bio.terashima_et_al_2006.current.cf.IVRCC