org.simBio.bio.matsuoka_et_al_2003.function
Class ReversalPotential

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2003.function.ReversalPotential

All Implemented Interfaces:

Node

public class ReversalPotential
extends Reactor

calculate reversal potential of the specific ion.

Version:

$Revision: 1.1 $

Author:

Nobuaki Sarai

See Also:

Matsuoka et al, 2003,
XML example,
explanation (Japanese, WORD doc)

Field Summary

double	F Faraday constant
Node	in intracellular ion concentration (mM)
Node	out extracellular ion concentration (mM)
double	R Gas constant
Node	T the absolute temperature (K)
double	valence valence

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

ReversalPotential()

Method Summary

protected void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

out

public Node out

extracellular ion concentration (mM)

in

public Node in

intracellular ion concentration (mM)

T

public Node T

the absolute temperature (K)

valence

public double valence

valence

R

public double R

Gas constant

F

public double F

Faraday constant

Constructor Detail

ReversalPotential

public ReversalPotential()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)

See Also:

Reactor.calculate(double)