org.simBio.core
Class Reactor

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor

All Implemented Interfaces:

Node

Direct Known Subclasses:

Acidity, AK, AmplitudeNaK, Anoxia, ANT, ATPsynthase, ATPsynthesis, Average, BetaAR_Gs, Buffer, CaBuffer, CAMP, Charge, Charge, CK, CN, Compartment, Compartment, ComplexI, ComplexIII, ComplexIV, ConcentrationCyta2, Conductor, ConstantField, CrossBridge, CrossBridgeLength, CrossBridgeNL, Current, Current, Current, Diffusion, Diffusion, Diffusion, Diffusion_a, Diffusion_t, DualCaBuffer, Electroneutrality, ENaCa, FCCP, Function, GapJunction, GradientP, GradientpH, HBuffering, Hodgkin_huxley_squid_axon_1952_modified, I_K, I_L, I_Na, I_stim, IsotonicContraction, JunctionalConductance, KoDependency, LChange, Leak, Leak, MassConservation, MassConservation2, Membrane, MembranePotential, MembraneTransporter, MetalFreeConcentration, Model, Model, MultiStateModel, NSRLeak, ODE, Ouabain, OxidativePhosphorylation, parabola, PartialPotential, PhosphateCarrier, PKA, PLB, PressureToConcentration, ProtonLeak, Qpump, Qrel, Rate, RateConstant, Ratio, RedoxPotential, RedoxPotentialCyta, Release, Release, ReversalPotential, ReversalPotential2, RyR, SR, SR, SRCA, StepChanger, StepChanger2, Stimulus, SubstrateDehydrogenation, TonicityChange, TotalVolume, Transfer, Troponin, Troponin, TwoStateModel, Uptake, UpTake, Vanderpol_model_1928, VoltageClamp, Volume, VolumeRatio, VolumeRatio, WaterFlux, Zvalue

public abstract class Reactor
extends Composite

set of equations.

Version:

$Revision: 1.1 $

Author:

Nobuaki Sarai

Field Summary

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

Reactor()

Method Summary

protected abstract void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Constructor Detail

Reactor

public Reactor()

Method Detail

calculate

protected abstract void calculate(double t)

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Parameters:

t - elapsed time (ms)