org.simBio.bio.kuzumoto_et_al_2007.contraction
Class CrossBridgeLength

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.kuzumoto_et_al_2007.contraction.CrossBridgeLength

All Implemented Interfaces:

Node

public class CrossBridgeLength
extends Reactor

Length of cross bridge of NL contraction model, Negroni JA and Lascano EC. J Mol Cell Cardiol 31: 1509-1526, 1999.

Version:

$Id: CrossBridgeLength.java,v 1.1 2007/12/15 07:21:54 nsarai Exp $

Author:

SHIMAYOSHI Takao

See Also:

Negroni JA and Lascano EC, J Mol Cell Cardiol 28: 915-929, 1996.

Field Summary

double	B turn over rate of cross bridge sliding 1200/s=1200/1000ms=1.2/ms
Node	dXdt derivative value of inextensibleLength
protected double	hc lower limit of cross bridge lendgth 0.005 um
Node	L half sarcomere length
Node	X half length of thick filament + thin filament length over the non-overlap zone

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

CrossBridgeLength()

Method Summary

protected void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

B

public double B

turn over rate of cross bridge sliding 1200/s=1200/1000ms=1.2/ms

hc

protected double hc

lower limit of cross bridge lendgth 0.005 um

X

public Node X

half length of thick filament + thin filament length over the non-overlap zone

dXdt

public Node dXdt

derivative value of inextensibleLength

L

public Node L

half sarcomere length

Constructor Detail

CrossBridgeLength

public CrossBridgeLength()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)