org.simBio.bio.matsuoka_et_al_2004.function
Class MassConservation2

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2004.function.MassConservation2

All Implemented Interfaces:

Node

Direct Known Subclasses:

ConcentrationAMP, ConcentrationAMP, ConcentrationPi

public class MassConservation2
extends Reactor

calculation of molecular concentration conformed to mass conservation law

  [A] = [A]total - [A']
 

Since:

rc20

Version:

$Log: MassConservation2.java,v $ Revision 1.1 2005/11/01 06:32:39 mikaelwing First version of simBio hosted on sourceforge, version 0.3 Revision 1.1 2005/09/12 04:57:23 sarai rearrenge folder structure as a Maven style Revision 1.2 2005/08/04 08:43:04 sarai revise Javadoc to suppress Warnings
2005/02/01 08:51:20 Some comments were updated to make Javadoc.
2004/12/17 05:43:03 update
2004/09/16 10:32:07 Created

Author:

SAITO Ryuta

See Also:

Matsuoka et al. (2004) Korzeniewski & Zoladz (2001)
MassConservation XML example explanation (Japanese, WORD doc)

Field Summary

double	other1 other concentration of the same molecular group
double	other2 other concentration of the same molecular group
double	total total concentration

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

MassConservation2()

Method Summary

protected void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

total

public double total

total concentration

other1

public double other1

other concentration of the same molecular group

other2

public double other2

other concentration of the same molecular group

Constructor Detail

MassConservation2

public MassConservation2()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)