org.simBio.bio.takeuchi_et_al_2006.function
Class Electroneutrality

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.takeuchi_et_al_2006.function.Electroneutrality

All Implemented Interfaces:

Node

public class Electroneutrality
extends Reactor

Calculate difference between total amounts of cations and anions.

Version:

$Id: Electroneutrality.java,v 1.1 2006/11/17 08:08:04 atakeuchi Exp $

Author:

Ayako Takeuchi

Field Summary

Node	aCa amount of intracellular Ca2+ [pEq]
Node	aCl amount of intracellular Cl- [pEq]
Node	aK amount of intracellular K+ [pEq]
Node	aLA amount of intracellular LA [pEq]
Node	aNa amount of intracellular Na+ [pEq]
Node	Ca concentration of intracellular Ca2+ [mM]
Node	Cl concentration of intracellular Cl- [mM]
Node	K concentration of intracellular K+ [mM]
Node	LA concentration of intracellular LA [mM]
Node	Na concentration of intracellular Na+ [mM]
Node	totalanion amount of intracellular total anions [pEq]
Node	totalcation amount of intracellular total cations [pEq]
Node	volume intracellular actuve volume [um^3]

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

Electroneutrality()

Method Summary

protected void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

Na

public Node Na

concentration of intracellular Na⁺ [mM]

K

public Node K

concentration of intracellular K⁺ [mM]

Cl

public Node Cl

concentration of intracellular Cl^- [mM]

Ca

public Node Ca

concentration of intracellular Ca²⁺ [mM]

LA

public Node LA

concentration of intracellular LA [mM]

aNa

public Node aNa

amount of intracellular Na⁺ [pEq]

aK

public Node aK

amount of intracellular K⁺ [pEq]

aCl

public Node aCl

amount of intracellular Cl^- [pEq]

aCa

public Node aCa

amount of intracellular Ca²⁺ [pEq]

aLA

public Node aLA

amount of intracellular LA [pEq]

volume

public Node volume

intracellular actuve volume [um^3]

totalcation

public Node totalcation

amount of intracellular total cations [pEq]

totalanion

public Node totalanion

amount of intracellular total anions [pEq]

Constructor Detail

Electroneutrality

public Electroneutrality()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)