org.simBio.bio.matsuoka_et_al_2004.function
Class RedoxPotentialCyta

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2004.function.RedoxPotentialCyta

All Implemented Interfaces:

Node

public class RedoxPotentialCyta
extends Reactor

Calculation of the redox potential of cytochrome a

  Ema = Emc + dP * (2 + 2 * u) / 2
 

Since:

rc20

Version:

$Log: RedoxPotentialCyta.java,v $ Revision 1.1 2005/11/01 06:32:39 mikaelwing First version of simBio hosted on sourceforge, version 0.3 Revision 1.1 2005/09/12 04:57:24 sarai rearrenge folder structure as a Maven style Revision 1.2 2005/08/04 08:43:04 sarai revise Javadoc to suppress Warnings
2005/02/01 08:51:20 Some comments were updated to make Javadoc.
2004/12/17 05:43:03 update
2004/09/16 10:32:07 Created

Author:

SAITO Ryuta

See Also:

Matsuoka et al. (2004) Korzeniewski & Zoladz (2001)
RedoxPotential XML example explanation (Japanese, WORD doc)

Field Summary

Node	dP proton gradient
Node	Emc redox potential of cytochrome c
double	myu u value

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

RedoxPotentialCyta()

Method Summary

protected void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

Emc

public Node Emc

redox potential of cytochrome c

dP

public Node dP

proton gradient

myu

public double myu

u value

Constructor Detail

RedoxPotentialCyta

public RedoxPotentialCyta()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)