org.simBio.bio.matsuoka_et_al_2003.function
Class Diffusion

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2003.function.Diffusion

All Implemented Interfaces:

Node

public class Diffusion
extends Reactor

using dy/dt to calculate first order ordinary differential equation.

Version:

$Revision: 1.1 $

Author:

Nobuaki Sarai

Field Summary

double	infinity
Variable	target
double	tau

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

Diffusion()

Method Summary

protected void

calculate(double t) dy/dt = (inf - y)/ tau

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

target

public Variable target

infinity

public double infinity

tau

public double tau

Constructor Detail

Diffusion

public Diffusion()

Method Detail

calculate

protected void calculate(double t)

dy/dt = (inf - y)/ tau

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)