simBio

Packages

org.simBio	simBio: biological DYNAMIC simulation platform.
org.simBio.bio	for the biologists.
org.simBio.bio.cor
org.simBio.bio.faber_rudy_2000.current
org.simBio.bio.faber_rudy_2000.function
org.simBio.bio.faber_rudy_2000.molecule
org.simBio.bio.faber_rudy_2000.structure
org.simBio.bio.function
org.simBio.bio.henriquez_et_al_2001
org.simBio.bio.himeno_et_al_2008
org.simBio.bio.hodgkin_huxley_1952	Modifyed Hodgkin Huxley Squid Axon Model 1952
org.simBio.bio.kurata_et_al_2005.complex
org.simBio.bio.kurata_et_al_2005.current
org.simBio.bio.kurata_et_al_2005.flux
org.simBio.bio.kurata_et_al_2005.molecule
org.simBio.bio.kuratomi_et_al_2003.current.carrier
org.simBio.bio.kuzumoto_et_al_2007.contraction
org.simBio.bio.kuzumoto_et_al_2007.current
org.simBio.bio.kuzumoto_et_al_2007.current.carrier
org.simBio.bio.kuzumoto_et_al_2007.current.cf
org.simBio.bio.kuzumoto_et_al_2007.function
org.simBio.bio.kuzumoto_et_al_2007.molecule
org.simBio.bio.matsuoka_et_al_2003	The cardiac cell model proposed by Matsuoka et al, 2003.
org.simBio.bio.matsuoka_et_al_2003.complex
org.simBio.bio.matsuoka_et_al_2003.current
org.simBio.bio.matsuoka_et_al_2003.current.carrier
org.simBio.bio.matsuoka_et_al_2003.current.cf
org.simBio.bio.matsuoka_et_al_2003.current.channel
org.simBio.bio.matsuoka_et_al_2003.current.pipette
org.simBio.bio.matsuoka_et_al_2003.current.potassium
org.simBio.bio.matsuoka_et_al_2003.function	The common functions among models
org.simBio.bio.matsuoka_et_al_2003.molecule.buffer
org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca
org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme
org.simBio.bio.matsuoka_et_al_2004.current.carrier
org.simBio.bio.matsuoka_et_al_2004.exp
org.simBio.bio.matsuoka_et_al_2004.function
org.simBio.bio.matsuoka_et_al_2004.function.chemical
org.simBio.bio.matsuoka_et_al_2004.molecule
org.simBio.bio.matsuoka_et_al_2004.molecule.buffer
org.simBio.bio.matsuoka_et_al_2004.molecule.buffer.Ca
org.simBio.bio.matsuoka_et_al_2004.molecule.enzyme
org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain
org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter
org.simBio.bio.negroni_lascano_1996	The contraction model proposed by Negroni and Lascano, 1996.
org.simBio.bio.negroni_lascano_1996.exp
org.simBio.bio.noble_et_al_1998
org.simBio.bio.oka_et_al_2006.function
org.simBio.bio.oka_et_al_2006.function.kinetics
org.simBio.bio.oka_et_al_2006.structure
org.simBio.bio.sarai_et_al_2003
org.simBio.bio.sarai_et_al_2003.figure
org.simBio.bio.sarai_et_al_2006.current.carrier
org.simBio.bio.sarai_et_al_2006.current.cf
org.simBio.bio.sarai_et_al_2006.figure
org.simBio.bio.sarai_et_al_2006.function
org.simBio.bio.sarai_noma_2004	Single Na channel model, Sarai and Noma, 2004.
org.simBio.bio.sarai_noma_2004.fourState
org.simBio.bio.sarai_noma_2004.structure
org.simBio.bio.takeuchi_et_al_2006.current
org.simBio.bio.takeuchi_et_al_2006.function
org.simBio.bio.tenTusscher_et_al_2004.complex
org.simBio.bio.tenTusscher_et_al_2004.current
org.simBio.bio.tenTusscher_et_al_2004.current.carrier
org.simBio.bio.tenTusscher_et_al_2004.current.pipette
org.simBio.bio.tenTusscher_et_al_2004.flux
org.simBio.bio.tenTusscher_et_al_2004.function
org.simBio.bio.terashima_et_al_2006.complex
org.simBio.bio.terashima_et_al_2006.current	Classes for membrane currents.
org.simBio.bio.terashima_et_al_2006.current.carrier
org.simBio.bio.terashima_et_al_2006.current.cf
org.simBio.bio.terashima_et_al_2006.current.channel
org.simBio.bio.terashima_et_al_2006.current.potassium
org.simBio.bio.terashima_et_al_2006.experiment	Classes for experimental manipulation.
org.simBio.bio.terashima_et_al_2006.function	The common functions among models
org.simBio.core	The basal Classes of the simBio simBioの基盤クラス群。 他のクラスは全て、ここにあるクラスを参照もしくは継承もしくは利用しています。
org.simBio.core.integrator
org.simBio.serialize	serializer 直列化と復元
org.simBio.serialize.xml	XML serializer
org.simBio.sim.analyzer	analyzers which inherit core.Analyzer, core.Analyserを継承するクラス群
org.simBio.sim.analyzer.csv	CSV maker 計算結果をCSV形式で書き出します。
org.simBio.sim.analyzer.csv.keep
org.simBio.sim.analyzer.csv.result
org.simBio.sim.analyzer.graph
org.simBio.sim.analyzer.graph.plot
org.simBio.sim.analyzer.graph.results
org.simBio.sim.analyzer.graph.simple	2D Graph maker 計算結果を2次元グラフで表示する。
org.simBio.sim.analyzer.measure
org.simBio.sim.dm	Database Manager created by Hido.
org.simBio.sim.dm.exchange
org.simBio.sim.dm.util
org.simBio.sim.gui	Graphical user interface
org.simBio.sim.gui.toolKit
org.simBio.sim.gui.toolKit.dndmenu
org.simBio.sim.js
org.simBio.sim.js.entry
org.simBio.sim.js.jini
org.simBio.sim.ps
org.simBio.sim.ps.serialize
org.simBio.sim.ps.view
org.simBio.tools.remote
org.simBio.tools.remote.process
org.simBio.util
org.simBio.util.numerical
org.simBio.util.numerical.methods
org.simBio.util.taglets