org.simBio.bio.terashima_et_al_2006.complex
Class WaterFlux

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.terashima_et_al_2006.complex.WaterFlux

All Implemented Interfaces:

Node

public class WaterFlux
extends Reactor

Water flux across the cell membrane [um³/ms].

Version:

$Log: WaterFlux.java,v $ Revision 1.1 2005/11/01 06:32:40 mikaelwing First version of simBio hosted on sourceforge, version 0.3 Revision 1.1 2005/10/17 07:53:07 mikael Moved from branch dev_terashima_et_al_2005 Revision 1.1.2.7 2005/07/01 11:55:43 sarai revised Javadoc
2005/07/01 02:50:58 Sarai hydraulic conductivity is added, and put links
2005/06/17 01:59:49 Takeuchi The javadoc comments are revised.
2005/06/10 06:15:15 Sarai moved to simBio branch dev_terashima_et_al_2005
2005/06/08 06:23:26 Sarai Remove volume ratio calculation from WaterFlux

Author:

Keisuke Terashima

See Also:

WaterFlux.ja.doc (Japanese, WORD doc) Sasaki et al, 1999

Field Summary

Node	Caext concentration of extracellular Ca2+ [mM]
Node	Caint concentration of intracellular Ca2+ [mM]
Node	Clext concentration of extracellular Cl- [mM]
Node	Clint concentration of intracellular Cl- [mM]
double	Cm membrane capacitance [pF]
Node	Kext concentration of extracellular K+ [mM]
Node	Kint concentration of intracellular K+ [mM]
Node	LAext concentration of extracellular large anionic compound [mM]
Node	LAint concentration of intracellular large anionic compound [mM]
Node	Naext concentration of extracellular Na+ [mM]
Node	Naint concentration of intracellular Na+ [mM]
Node	TotalIonext sum of extracellular ionic concentration [mM]
Node	TotalIonint sum of intracellular ionic concentration [mM]
Node	volumeext extracellular volume [um3]
Node	volumeint intracellular volume [um3]

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

WaterFlux()

Method Summary

protected void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

Naint

public Node Naint

concentration of intracellular Na⁺ [mM]

Kint

public Node Kint

concentration of intracellular K⁺ [mM]

Clint

public Node Clint

concentration of intracellular Cl^- [mM]

Caint

public Node Caint

concentration of intracellular Ca²⁺ [mM]

LAint

public Node LAint

concentration of intracellular large anionic compound [mM]

Naext

public Node Naext

concentration of extracellular Na⁺ [mM]

Kext

public Node Kext

concentration of extracellular K⁺ [mM]

Clext

public Node Clext

concentration of extracellular Cl^- [mM]

Caext

public Node Caext

concentration of extracellular Ca²⁺ [mM]

LAext

public Node LAext

concentration of extracellular large anionic compound [mM]

volumeint

public Node volumeint

intracellular volume [um³]

volumeext

public Node volumeext

extracellular volume [um³]

TotalIonint

public Node TotalIonint

sum of intracellular ionic concentration [mM]

TotalIonext

public Node TotalIonext

sum of extracellular ionic concentration [mM]

Cm

public double Cm

membrane capacitance [pF]

Constructor Detail

WaterFlux

public WaterFlux()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)