org.simBio.bio.kuzumoto_et_al_2007.contraction
Class Troponin

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponin

All Implemented Interfaces:

Node

Direct Known Subclasses:

Troponinmit

public class Troponin
extends Reactor

troponin of Negroni and Lascano contraction model. Modified the scale factor dX/dt to make stable with load.

Version:

$Id: Troponin.java,v 1.1 2007/12/15 07:21:54 nsarai Exp $

Author:

SHIMAYOSHI Takao

See Also:

Negroni JA and Lascano EC, J Mol Cell Cardiol 28: 915-929, 1996.

Field Summary

Node	ATP
protected double	BIAS
Node	Ca
Node	CaTotal
Node	dATP
Node	dXdt
protected double	dXdtFactor
Node	L
protected double	La
protected double	r1
protected double	r2 adjusted by 2.5 * r1
Node	T
Node	TCa
Node	TCaCB
Node	TCB
double	Tt
protected double	Y1
protected double	Y2
protected double	Y3
protected double	Y4
protected double	Yd
protected double	Z1
protected double	Z2
protected double	Z3

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

Troponin()

Method Summary

protected void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

r1

protected double r1

r2

protected double r2

adjusted by 2.5 * r1

BIAS

protected double BIAS

Y1

protected double Y1

Z1

protected double Z1

Y2

protected double Y2

Z2

protected double Z2

Y3

protected double Y3

Z3

protected double Z3

Y4

protected double Y4

Yd

protected double Yd

La

protected double La

Tt

public double Tt

dXdtFactor

protected double dXdtFactor

T

public Node T

TCa

public Node TCa

TCaCB

public Node TCaCB

TCB

public Node TCB

L

public Node L

dXdt

public Node dXdt

Ca

public Node Ca

CaTotal

public Node CaTotal

ATP

public Node ATP

dATP

public Node dATP

Constructor Detail

Troponin

public Troponin()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)