org.simBio.bio.terashima_et_al_2006.function
Class AmplitudeNaK

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.terashima_et_al_2006.function.AmplitudeNaK

All Implemented Interfaces:

Node

public class AmplitudeNaK
extends Reactor

Calculate volume-dependency of INaK amplitude.

Version:

$Log: AmplitudeNaK.java,v $ Revision 1.1 2005/11/01 06:32:40 mikaelwing First version of simBio hosted on sourceforge, version 0.3 Revision 1.1 2005/10/17 07:53:05 mikael Moved from branch dev_terashima_et_al_2005 Revision 1.1.2.6 2005/07/01 11:55:43 sarai revised Javadoc
Revision 1.1.2.4 2005/07/01 01:19:50 sarai put links
2005/06/30 11:33:56 takeuchi Vt instead of Vi is used
2005/06/17 01:48:46 takeuchi The javadoc comments are revised.
2005/2/5 Takeuchi change permeability from double to Node, it can work in both Type

Author:

Ayako Takeuchi

See Also:

AmplitudeNaK.ja.doc (Japanese, WORD doc) AmplitudeNaK.xml Sasaki et al, 1994 Sasaki et al, 1999

Field Summary

double	amplitudeNaK factor to define the maximum INaK [pA msec/pF]
double	halfMaxVt cell volume at which the change in INaK is half of its maximum value [um^3]
double	maxFactor factor to define maximum INaK activation by swelling
double	slope slope [um^3]
Node	Vt total cell volume [um^3]

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

AmplitudeNaK()

Method Summary

protected void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

amplitudeNaK

public double amplitudeNaK

factor to define the maximum INaK [pA msec/pF]

maxFactor

public double maxFactor

factor to define maximum INaK activation by swelling

slope

public double slope

slope [um^3]

halfMaxVt

public double halfMaxVt

cell volume at which the change in INaK is half of its maximum value [um^3]

Vt

public Node Vt

total cell volume [um^3]

Constructor Detail

AmplitudeNaK

public AmplitudeNaK()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)