org.simBio.bio.matsuoka_et_al_2003.function
Class RateConstant

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2003.function.RateConstant

All Implemented Interfaces:

Node

Direct Known Subclasses:

RateConstantK, RateConstantVm

public abstract class RateConstant
extends Reactor

function, c1/(c2*exp((x+c3)/c4)+c5*exp((x+c6)/c7))

Version:

$Revision: 1.1 $

Author:

Nobuaki Sarai

Field Summary

double	c1
double	c2
double	c3
double	c4
double	c5
double	c6
double	c7

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

RateConstant()

Method Summary

protected void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

c1

public double c1

c2

public double c2

c3

public double c3

c4

public double c4

c5

public double c5

c6

public double c6

c7

public double c7

Constructor Detail

RateConstant

public RateConstant()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)