org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter
Class ANT

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter.ANT

All Implemented Interfaces:

Node

public class ANT
extends Reactor

ADP/ATP carrier, ADP/ATP translocase, SLC25A4.

Version:

$Id: ANT.java,v 1.2 2007/11/22 06:48:21 nsarai Exp $

Author:

SAITO Ryuta

See Also:

Table 12 in Matsuoka et al, 2004 Table 2 in Korzeniewski & Zoladz 2001 Korzeniewski & Zoladz 2003
XML example explanation (Japanese, WORD doc)

Field Summary

Node	ADPfcell Mg free ADP concentration in cytosol (mM)
Node	ADPfmito Mg free ADP concentration in mitohocndria (mM)
Node	ADPtcell total ADP concentration in cytosol (mM)
double	Amp amplifying factor described in Kuzumoto et al, 2007.
Node	ATPfcell Mg free ATP concentration in cytosol (mM)
Node	ATPfmito Mg free ATP concentration in mitohocndria (mM)
Node	ATPtcell total ATP concentration in cytosol (mM)
Node	ATPtmito total ATP concentration in mitohocndria (mM)
Node	dPsicell membrane potential at matrix side of mitochondrial inner membrane (mV)
Node	dPsimito membrane potential at matrix side of mitochondrial inner membrane (mV)
Node	Hmito proton concentration in mitohocndria (mM)
double	kEX rate constant of ADP/ATP carrier (mM/msec)
double	KmADP dissociation constant of ADP for ADP/ATP carrier (mM)
double	myu u value (=0.861)
Node	rbuffermito buffering capacity for proton in mitochondrial matrix
Node	Rcm ratio of cytosol volume and mitochondria volume
double	Zvalue Z = 2.303 * R * T / F

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

ANT()

Method Summary

protected void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

dPsimito

public Node dPsimito

membrane potential at matrix side of mitochondrial inner membrane (mV)

dPsicell

public Node dPsicell

membrane potential at matrix side of mitochondrial inner membrane (mV)

ATPtcell

public Node ATPtcell

total ATP concentration in cytosol (mM)

ADPtcell

public Node ADPtcell

total ADP concentration in cytosol (mM)

ATPfcell

public Node ATPfcell

Mg free ATP concentration in cytosol (mM)

ADPfcell

public Node ADPfcell

Mg free ADP concentration in cytosol (mM)

ATPtmito

public Node ATPtmito

total ATP concentration in mitohocndria (mM)

ATPfmito

public Node ATPfmito

Mg free ATP concentration in mitohocndria (mM)

ADPfmito

public Node ADPfmito

Mg free ADP concentration in mitohocndria (mM)

Hmito

public Node Hmito

proton concentration in mitohocndria (mM)

Zvalue

public double Zvalue

Z = 2.303 * R * T / F

Rcm

public Node Rcm

ratio of cytosol volume and mitochondria volume

rbuffermito

public Node rbuffermito

buffering capacity for proton in mitochondrial matrix

kEX

public double kEX

rate constant of ADP/ATP carrier (mM/msec)

KmADP

public double KmADP

dissociation constant of ADP for ADP/ATP carrier (mM)

myu

public double myu

u value (=0.861)

Amp

public double Amp

amplifying factor described in Kuzumoto et al, 2007.

Constructor Detail

ANT

public ANT()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)