A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

S

s - Variable in class org.simBio.bio.noble_et_al_1998.Model
 
s - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.Ito
 
s - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.Ito_endo
 
save() - Method in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork
現在のファイル名で保存する
saveAs() - Method in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork
ダイアログを開いて保存する
saveDialogBox(String) - Method in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork
名前を付けてファイルを保存するための、ダイアログボックスを開く
saveProc(String) - Method in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork
ファイルの書き込み処理を行う
saveProc() - Method in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork
 
saveSelectDialogBox() - Method in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork
現在のファイルを破棄するか保存するかを選択するダイアログボックスを開く
scale - Variable in class org.simBio.sim.analyzer.measure.Amplitude
scaling factor
scale - Variable in class org.simBio.sim.analyzer.measure.AmplitudeInCycle
scaling factor
scales - Static variable in class org.simBio.sim.ps.view.AbstractPlot
scale factor to plot each evaluation
SCRIPT_PATH - Static variable in class org.simBio.tools.remote.RemoteConstant
script pathを表すプロパティキー
SecantMethod - Class in org.simBio.util.numerical.methods
This class provides Secant method to solve a nonlinear equation.
SELECTED_CANCEL - Static variable in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork
 
SELECTED_DISCARD - Static variable in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork
 
SELECTED_OK - Static variable in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork
 
SelectedValuesExchanger - Class in org.simBio.sim.dm.exchange
指定した値を順に設定するExchanger
SelectedValuesExchanger() - Constructor for class org.simBio.sim.dm.exchange.SelectedValuesExchanger
 
SENDER_ID_FILE - Static variable in class org.simBio.JSEntry
property key to get file name of serialized id.
Serializer - Interface in org.simBio.serialize
serialize and deserialize.
SerializerFactory - Class in org.simBio.serialize
SerializerFactory.
ServiceLocator - Class in org.simBio.sim.js.jini
Service locator
ServiceLocator() - Constructor for class org.simBio.sim.js.jini.ServiceLocator
 
setAction(Action) - Method in class org.simBio.sim.gui.toolKit.dndmenu.DnDTransferBean
 
setAreaChanged() - Method in class org.simBio.sim.analyzer.graph.AbstractGraph
Provides notification when the displayed area has changed. For Graph etc, if calculation data is processed and cached, if the display area scrolls, if the resolution changes etc, there are cases where it is necessary to get rid of the cache. In such a case, when this method is called it gets rid of the cache.
setAreaChanged() - Method in class org.simBio.sim.analyzer.graph.Graph
Notifies that the displayed area has changed.
setAttributes(Node) - Method in class org.simBio.sim.dm.exchange.LogRatioExchanger
 
setChild(Exchanger) - Method in class org.simBio.sim.dm.exchange.Exchanger
 
setClassName(String) - Method in class org.simBio.core.Initializer
Sets the className.
setColor(Color) - Method in class org.simBio.sim.analyzer.graph.plot.AttributeString
色を設定する.
setContainer(Container) - Method in interface org.simBio.sim.analyzer.graph.IViewer
 
setContainer(Container) - Method in class org.simBio.sim.analyzer.graph.simple.Viewer
Sets the container.
setContainer(JPanel) - Method in class org.simBio.sim.analyzer.graph.simple.Viewer
 
setContainer(Container) - Method in class org.simBio.sim.analyzer.graph.Viewer
Sets the container.
setData(double, int, double) - Method in class org.simBio.sim.analyzer.graph.GraphReplotBuffer
Registers calculation results in the redrawing buffer. Called in the analyze() method of Graph
setDocumentLocator(Locator) - Method in class org.simBio.serialize.xml.LogSax2
ClassCastException is thrown by IBMJDK142 + Xerces-J causes for Locator2 Sun J2SDK1.4.1 + Xerces-J or Sun J2SE5.0 is OK.
setEncoding(String) - Method in class org.simBio.serialize.xml.XMLSerializer
Set source encoding.
setEvalLabels(String[]) - Method in class org.simBio.sim.ps.Result
 
setEvalValues(double[]) - Method in class org.simBio.sim.ps.Result
 
setFileName(String) - Method in interface org.simBio.sim.analyzer.graph.IViewer
 
setFileName(String) - Method in class org.simBio.sim.analyzer.graph.simple.Viewer
XMLファイル名を設定する.
setFileName(String) - Method in class org.simBio.sim.analyzer.graph.Viewer
Sets an XML file name.
setFont(Font) - Method in class org.simBio.sim.analyzer.graph.plot.AttributeString
フォントを設定する.
setIconFileName(String) - Method in class org.simBio.sim.gui.toolKit.dndmenu.DnDAction
アイコンファイル名を設定する
setInitializer(Initializer) - Method in class org.simBio.core.Component
set parent, root, level, name and valueString and attend to the parent's Children.
setInitializer(Initializer) - Method in class org.simBio.core.integrator.Concentration
set initial amount.
setInitializer(Initializer) - Method in class org.simBio.core.Parameter
 
setInitialValue(String) - Method in class org.simBio.core.Initializer
Sets the initialValue.
setJComponent(JComponent) - Method in class org.simBio.sim.gui.toolKit.dndmenu.DnDTransferBean
 
setLinks() - Method in class org.simBio.bio.sarai_noma_2004.fourState.MonteCarlo
 
setLinks() - Method in class org.simBio.bio.sarai_noma_2004.fourState.NaChannel
 
setLinks() - Method in class org.simBio.bio.sarai_noma_2004.fourState.ODE
set arias for gates
setLinks() - Method in class org.simBio.core.Component
called after instance tree was constructed, getNode, getLink here,
インスタンスツリー作成後に呼び出される,
setLinks() - Method in class org.simBio.core.Conductor
call after instance tree has constructed.
setLinks() - Method in class org.simBio.core.Link
called after instance tree was constructed, getNode, getLink here,
インスタンスツリー作成後に呼び出される, 親に自分と同じ名前のNodeがあったら、自分自身をリンクと見なし、 自分の値(リンク先を表す文字列)を引数に親のgetLinkを呼んでリンクを張ります
setLinks(ReactorList) - Method in class org.simBio.core.VariableList
set reactor list for calculate dydt
setLinks() - Method in class org.simBio.sim.analyzer.graph.AbstractGraph
Link to the Viewer, AxisX, AxisY and count number of the target, get array.
setLinks() - Method in class org.simBio.sim.analyzer.graph.Axis
Set link to the Viewer to get scale factor later.
setLinks() - Method in class org.simBio.sim.analyzer.graph.AxisX
 
setLinks() - Method in class org.simBio.sim.analyzer.graph.AxisXFix
 
setLinks() - Method in class org.simBio.sim.analyzer.graph.AxisY
 
setLinks() - Method in class org.simBio.sim.analyzer.graph.BasicGraph
 
setLinks() - Method in class org.simBio.sim.analyzer.graph.RelationGraph
 
setLinks() - Method in class org.simBio.sim.analyzer.graph.simple.Axis
set link to the Viewer to get scale factor later.
setLinks() - Method in class org.simBio.sim.analyzer.graph.simple.AxisX
 
setLinks() - Method in class org.simBio.sim.analyzer.graph.simple.Graph
link to the Viewer, and count number of the target, get array.
setLinks() - Method in class org.simBio.sim.analyzer.graph.simple.RateGraph
 
setLinks() - Method in class org.simBio.sim.analyzer.graph.simple.RateGraph_KA
 
setLinks() - Method in class org.simBio.sim.analyzer.graph.simple.RelationGraph
link to the Viewer, and count number of the target, get array.
setLinks() - Method in class org.simBio.sim.analyzer.graph.simple.Viewer
When there are no container, construct OnScreen, and clear.
setLinks() - Method in class org.simBio.sim.analyzer.graph.Viewer
When there are no container, construct OnScreen, and clear.
setLinks() - Method in class org.simBio.sim.analyzer.StopWatch
 
setMaxThreads(int) - Static method in class org.simBio.Run
Sets the maximum number of threads.
setName(String) - Method in class org.simBio.core.Initializer
Sets the name.
setNumSeries(int) - Method in class org.simBio.sim.analyzer.graph.results.TimeSeriesValues
系列数をセットする.
setParamLabels(String[]) - Method in class org.simBio.sim.ps.Result
 
setParamValues(double[]) - Method in class org.simBio.sim.ps.Result
 
setParent(Composite) - Method in class org.simBio.core.Initializer
Sets the parent.
setPrintableRect(Rectangle) - Method in interface org.simBio.sim.analyzer.graph.IViewer
 
setPrintableRect(Rectangle) - Method in class org.simBio.sim.analyzer.graph.simple.Viewer
 
setPrintableRect(Rectangle) - Method in class org.simBio.sim.analyzer.graph.Viewer
Sets the printing area intrinsic to the printer. Before printing, please set the printable area information intrinsic to the printer, which can be obtained from javax.print.attribute.standard.MediaPrintableArea.
setPrintRect(Rectangle) - Method in interface org.simBio.sim.analyzer.graph.IViewer
 
setPrintRect(Rectangle) - Method in class org.simBio.sim.analyzer.graph.simple.Viewer
 
setPrintRect(Rectangle) - Method in class org.simBio.sim.analyzer.graph.Viewer
Sets the printing area which was set with a dialog. Before printing, please set the printable area (Imageable) information, which can be obtained from java.awt.print.PageFormat.
setRectanglePage(Rectangle) - Method in class org.simBio.sim.analyzer.graph.plot.AbstractPlot
 
setRectanglePage(Rectangle) - Method in interface org.simBio.sim.analyzer.graph.plot.IPlot
ページ全体の領域をセットする.
setRepaintFlag() - Method in class org.simBio.sim.analyzer.graph.Viewer
Orders the redrawing of the screen. {@.en The actual redrawing is done the next time the analyze() method of Viewer is called.
setSelected(Object, boolean) - Method in interface org.simBio.sim.gui.CheckedJTreeModel
node にチェック状態を設定します.
setSeries(int) - Method in class org.simBio.sim.analyzer.graph.results.CachedBuffer
系列数を設定する.
setShortDescription(String) - Method in class org.simBio.sim.gui.toolKit.dndmenu.DnDAction
短い説明文字列を設定する ツールチップの表示に使われます。
setSizePage(Dimension) - Method in class org.simBio.sim.analyzer.graph.plot.AbstractPlot
 
setSizePage(Dimension) - Method in interface org.simBio.sim.analyzer.graph.plot.IPlot
左上座標を(0,0)として、ページ全体のサイズをセットする.
setTargetAttribute(Node, String) - Method in class org.simBio.sim.dm.exchange.Exchanger
 
setTargetAttribute(Node) - Method in class org.simBio.sim.dm.exchange.NullExchanger
 
setTargetAttribute(Node, String) - Method in class org.simBio.sim.dm.exchange.UniformRatioExchanger
 
setText(String) - Method in class org.simBio.sim.analyzer.graph.plot.AttributeString
テキスト文字列を設定する.
setText(AttributeString) - Method in class org.simBio.sim.analyzer.graph.plot.PlotPrinter.TitleItem
(内部用)文字列を設定する.
setText(String) - Method in class org.simBio.sim.gui.toolKit.dndmenu.DnDAction
見出し文字列を設定する
setTexts(AttributeString[]) - Method in class org.simBio.sim.analyzer.graph.plot.PlotPrinter.LegendItem
(内部用)文字列配列を設定する.
setTimeSeriesLabel(String) - Method in class org.simBio.sim.ps.Result
 
settings() - Static method in class org.simBio.bio.sarai_et_al_2003.figure.Fig1
Settings for the protocol XML-file.
settings() - Static method in class org.simBio.bio.sarai_et_al_2003.figure.Fig2A
Settings for the protocol XML-file.
settings() - Static method in class org.simBio.bio.sarai_et_al_2003.figure.Fig2B
Settings for the protocol XML-file.
settings() - Static method in class org.simBio.bio.sarai_et_al_2003.figure.HR_APD
Base settings for protocol XML-files.
settings() - Static method in class org.simBio.bio.sarai_et_al_2006.figure.ATPonNCXvsPMCA
Settings for the protocol XML-file.
settings() - Static method in class org.simBio.bio.sarai_et_al_2006.figure.CaFigure
Base settings for protocol XML-files.
settings() - Static method in class org.simBio.bio.sarai_et_al_2006.figure.CaLvsPMCAwoNCX
Settings for the protocol XML-file.
settings() - Static method in class org.simBio.bio.sarai_et_al_2006.figure.NCXvsCaL
Settings for the protocol XML-file.
settings() - Static method in class org.simBio.bio.sarai_et_al_2006.figure.NCXvsPMCA
Settings for the protocol XML-file.
setUnits(String) - Method in class org.simBio.core.Initializer
Sets the units.
setURL(URL) - Method in class org.simBio.sim.gui.toolKit.HTMLViewJDialog
 
setValue(double) - Method in class org.simBio.core.Component
always throws UnsupportedOperationException, need to implement 'Node'
setValue(double) - Method in class org.simBio.core.integrator.Concentration
 
setValue(double) - Method in class org.simBio.core.integrator.Euler
log warn, this Method should not be used.
setValue(double) - Method in class org.simBio.core.integrator.RungeKutta
TODO setValueで更新出来た方がよいでしょうか?
setValue(double) - Method in interface org.simBio.core.Node
set current value
引数を現在値に設定する。
setValue(double) - Method in class org.simBio.core.Parameter
 
setValueString(String) - Method in class org.simBio.core.Component
文字列を受け取り現在値に設定する。 updateObserverに通知する。
setValueString(String) - Method in class org.simBio.core.integrator.Concentration
 
setValueString(String) - Method in class org.simBio.core.Parameter
 
setValueToField() - Method in class org.simBio.core.Parameter
親が自分と同じ名前のpublic doubleを持っていれば、自分の値を設定する。
setWriteBufferCapacity(int) - Method in class org.simBio.sim.analyzer.graph.results.CachedBuffer
書き込みバッファの容量を設定する.
setWriter(PrintWriter) - Method in class org.simBio.tools.remote.process.AbstractAfterProcess
 
setXmlLabel(String) - Method in class org.simBio.sim.ps.Result
 
setXmlRootDir() - Method in class org.simBio.sim.dm.ProtocolParser
Add XML root dir (if exist) to XML-file path.
setXYSeriesCollection(XYSeriesCollection) - Method in class org.simBio.sim.ps.Result
 
shouldSelectCell(EventObject) - Method in class org.simBio.sim.gui.CheckedJTree.CheckedJTreeCellRenderer
 
Siblings - Class in org.simBio.sim.analyzer.csv
should be placed into the xml file of the parent node from which one wants to get the childrens' parameters
親Reactorの持つ全てのVariableとReactorの値をcsv形式で書き出す
Siblings() - Constructor for class org.simBio.sim.analyzer.csv.Siblings
 
SIGNAL_END - Static variable in class org.simBio.tools.remote.RemoteConstant
CommandServer コマンド終了文言
sim_analyzer_measure - Static variable in class org.simBio.util.DevelopmentMode
org.simBio.sim.analyzer.measureパッケージ用開発モード定数
SimpleGUIFrameWork - Class in org.simBio.sim.gui.toolKit
GUIでのファイル/状態を表すクラス.
SimpleGUIFrameWork() - Constructor for class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork
 
sinfi - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.Ito
 
sinfi - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.Ito_endo
 
SingleCurrentAMP - Variable in class org.simBio.bio.himeno_et_al_2008.ICaL
to see single current amplitude
SingleCurrentAMP - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
to see single current amplitude
skippedEntity(String) - Method in class org.simBio.serialize.xml.LogSax2
Reports a skipped entity.
slope - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.IVRCC
slope
slope - Variable in class org.simBio.bio.terashima_et_al_2006.function.AmplitudeNaK
slope [um^3]
slowInact - Variable in class org.simBio.bio.terashima_et_al_2006.current.cf.Ist
 
slowInactivation - Variable in class org.simBio.bio.himeno_et_al_2008.Ist
gate variable
slowInactivation - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.Ist
gate variable
sodium_channel_g_Na - Variable in class org.simBio.bio.cor.Hodgkin_huxley_squid_axon_1952_modified
sodium_channel_g_Na (milliS_per_cm2).
sodium_channel_h_gate_h - Variable in class org.simBio.bio.cor.Hodgkin_huxley_squid_axon_1952_modified
sodium_channel_h_gate_h (dimensionless).
sodium_channel_m_gate_m - Variable in class org.simBio.bio.cor.Hodgkin_huxley_squid_axon_1952_modified
sodium_channel_m_gate_m (dimensionless).
SolubilityCoefficient - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.PressureToConcentration
 
solve(MathFunction[], Node[]) - Static method in class org.simBio.util.numerical.methods.BroydenMethod
Solves the specified nonlinear equations for the specified variables.
solve(MathFunction[], Node[], double, int) - Static method in class org.simBio.util.numerical.methods.BroydenMethod
Solves the specified nonlinear equations for the specified variables.
solve(MathMultivariableFunction[], Node[]) - Static method in class org.simBio.util.numerical.methods.BroydenMethod
Solves the specified nonlinear equations for the specified variables.
solve(MathMultivariableFunction[], Node[], double, int) - Static method in class org.simBio.util.numerical.methods.BroydenMethod
Solves the specified nonlinear equations for the specified variables.
solve(MathMultivariableFunction[], double[]) - Static method in class org.simBio.util.numerical.methods.BroydenMethod
Solves the specified nonlinear equations for the specified variables.
solve(MathMultivariableFunction[], double[], double, int) - Static method in class org.simBio.util.numerical.methods.BroydenMethod
Solves the specified nonlinear equations for the specified variables.
solve(double[], double[], double[]) - Static method in class org.simBio.util.numerical.methods.LUdecomposition
Solves the specified linear equations.
solve(MathFunction, Node) - Static method in class org.simBio.util.numerical.methods.SecantMethod
Solve the specified nonlinear equation.
solve(MathFunction, Node, double) - Static method in class org.simBio.util.numerical.methods.SecantMethod
Solve the specified nonlinear equation.
solve(MathUnivariableFunction, Node) - Static method in class org.simBio.util.numerical.methods.SecantMethod
Solve the specified nonlinear equation.
solve(MathUnivariableFunction, Node, double) - Static method in class org.simBio.util.numerical.methods.SecantMethod
Solve the specified nonlinear equation.
solveWithLU(int, double[], double[], int[], double[]) - Static method in class org.simBio.util.numerical.methods.LUdecomposition
Solves the system of linear equations with LU array.
sort(List) - Static method in class org.simBio.tools.remote.SortStatus
 
SortStatus - Class in org.simBio.tools.remote
計算ステータスファイルソートクラス
SpaceLocator - Class in org.simBio.sim.js.jini
Space locator
SpaceLocator() - Constructor for class org.simBio.sim.js.jini.SpaceLocator
 
SPM - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.IK1
the concentration of Spermine (mM)
SR - Class in org.simBio.bio.kurata_et_al_2005.complex
 
SR() - Constructor for class org.simBio.bio.kurata_et_al_2005.complex.SR
 
SR - Class in org.simBio.bio.tenTusscher_et_al_2004.complex
 
SR() - Constructor for class org.simBio.bio.tenTusscher_et_al_2004.complex.SR
 
SRCA - Class in org.simBio.bio.faber_rudy_2000.current
SR calcium pump.
SRCA() - Constructor for class org.simBio.bio.faber_rudy_2000.current.SRCA
 
srca - Variable in class org.simBio.bio.faber_rudy_2000.structure.NSR
 
ssActivation - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.INa
 
ssInactivation - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.INa
 
start() - Method in interface org.simBio.core.CalculationObserver
計算を開始するときに、このメソッドが呼び出されます。
start() - Method in class org.simBio.core.Conductor
start calculation.
start(Serializer, String, Reader) - Static method in class org.simBio.Run
Creates the model instance and starts the calculation.
startCDATA() - Method in class org.simBio.serialize.xml.LogSax2
Reports the start of a CDATA section.
startDocument() - Method in class org.simBio.serialize.xml.LogSax2
Reports the beginning of a document.
startDTD(String, String, String) - Method in class org.simBio.serialize.xml.LogSax2
Reports the start of a DTD declaration.
startElement(String, String, String, Attributes) - Method in class org.simBio.serialize.xml.LogSax2
Reports the start of an element.
startElement(String, String, String, Attributes) - Method in class org.simBio.sim.ps.serialize.TocReader
 
startEntity(String) - Method in class org.simBio.serialize.xml.LogSax2
Reports the start of some XML entities.
startExchange() - Method in class org.simBio.sim.dm.exchange.Exchanger
exchange()の後で、indexIteration_ をincrement
startExchange() - Method in class org.simBio.sim.dm.exchange.FileNameExchanger
 
startExchange() - Method in class org.simBio.sim.dm.exchange.OneTimeListExchanger
 
startFix - Variable in class org.simBio.sim.analyzer.measure.LeadPotential
 
startPrefixMapping(String, String) - Method in class org.simBio.serialize.xml.LogSax2
Begin scope of prefix-URI mapping.
STATUS_CLOSED - Static variable in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork
 
STATUS_MODIFIED - Static variable in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork
 
STATUS_OPENED - Static variable in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork
 
STATUS_PATH - Static variable in class org.simBio.tools.remote.RemoteConstant
 
statusChangedProc(String, int) - Method in class org.simBio.sim.gui.toolKit.SimpleGUIFrameWork
状態が変更された時に呼ばれる このメソッドでは、変更結果を元に画面の再描画を行う
stau - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.Ito
 
stau - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.Ito_endo
 
step - Variable in class org.simBio.bio.oka_et_al_2006.function.kinetics.MultiStateModel
the number of reaction steps
step - Variable in class org.simBio.bio.terashima_et_al_2006.experiment.StepChanger
 
step - Variable in class org.simBio.bio.terashima_et_al_2006.experiment.StepChanger2
 
step - Variable in class org.simBio.sim.analyzer.graph.simple.RateGraph_KA
 
StepChanger - Class in org.simBio.bio.function
Sequentially changes the value at the desired elapsed time.
StepChanger() - Constructor for class org.simBio.bio.function.StepChanger
 
StepChanger - Class in org.simBio.bio.terashima_et_al_2006.experiment
Change the value in a step manner.
StepChanger() - Constructor for class org.simBio.bio.terashima_et_al_2006.experiment.StepChanger
 
StepChanger2 - Class in org.simBio.bio.terashima_et_al_2006.experiment
step change
StepChanger2() - Constructor for class org.simBio.bio.terashima_et_al_2006.experiment.StepChanger2
 
StepChart - Class in org.simBio.sim.analyzer.graph.simple
targetをずらして表示する。
StepChart() - Constructor for class org.simBio.sim.analyzer.graph.simple.StepChart
 
StepChart - Class in org.simBio.sim.analyzer.graph
Shifts and displays the target. Overrides the line/point drawing method, and shifts the drawing position.
StepChart() - Constructor for class org.simBio.sim.analyzer.graph.StepChart
 
Stimulus - Class in org.simBio.bio.faber_rudy_2000.function
Constructor for Stimulus.
Stimulus() - Constructor for class org.simBio.bio.faber_rudy_2000.function.Stimulus
 
stoichiometryCa - Variable in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.Carrier
stoichiometry for Ca2+
stoichiometryCa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier
stoichiometry for Ca2+
stoichiometryCa - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.INaCa
stoichiometry for Ca2+
stoichiometryCa - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.carrier.Carrier
 
stoichiometryK - Variable in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.Carrier
stoichiometry for K+
stoichiometryK - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier
stoichiometry for K+
stoichiometryK - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.carrier.Carrier
 
stoichiometryNa - Variable in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.Carrier
stoichiometry for Na+
stoichiometryNa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier
stoichiometry for Na+
stoichiometryNa - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.INaCa
stoichiometry for Na+
stoichiometryNa - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.carrier.Carrier
 
stop() - Method in interface org.simBio.core.CalculationObserver
計算を終了するときに、このメソッドが呼び出されます。
stop() - Method in class org.simBio.core.Conductor
stop calculation.
Stop - Class in org.simBio.sim.js
Stop Workers.
Stop() - Constructor for class org.simBio.sim.js.Stop
 
stopCellEditing() - Method in class org.simBio.sim.gui.CheckedJTree.CheckedJTreeCellRenderer
 
StopWatch - Class in org.simBio.sim.analyzer
 
StopWatch() - Constructor for class org.simBio.sim.analyzer.StopWatch
 
StringInputStream - Class in org.simBio.sim.dm.util
StringをInputStreamに変換するクラス
StringInputStream(String) - Constructor for class org.simBio.sim.dm.util.StringInputStream
 
stringToColor(String) - Static method in class org.simBio.sim.analyzer.graph.ColorUtil
Returns a Color object, from a string which shows the colour. The string which displays the colour has the 2 patterns below #RRGGBB : Specifies each R,G,B with base 16 numbers {@.en RED, WHITE, ...
stringToColor(String, Color) - Static method in class org.simBio.sim.analyzer.graph.ColorUtil
Returns a Color object, from a string which shows the colour. The string which displays the colour has the 2 patterns below #RRGGBB : Specifies each R,G,B with base 16 numbers {@.en RED, WHITE, ...
Substrate - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.RedoxPotential
product and substrate concentrations of reaction
SubstrateDehydrogenation - Class in org.simBio.bio.matsuoka_et_al_2004.molecule
NADH dehydrogenation.
SubstrateDehydrogenation() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.molecule.SubstrateDehydrogenation
 
suffix_ - Variable in class org.simBio.sim.dm.exchange.FileNameExchanger
 
sum - Variable in class org.simBio.bio.kuzumoto_et_al_2007.function.Average
total amount
sum - Variable in class org.simBio.bio.sarai_et_al_2006.function.Rate
total amount
Sum - Class in org.simBio.sim.analyzer.measure
targetsの和を求める。
Sum() - Constructor for class org.simBio.sim.analyzer.measure.Sum
 
sumCa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaL
integration of ICaL
sumCa - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.channel.IRyR
integration of IRyR
sumCa - Variable in class org.simBio.bio.sarai_et_al_2006.current.cf.ICaL
integration of ICaL

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
Copyright © 2002-2008 Cell/Biodinamics simulation project. All Rights Reserved.