org.simBio.bio.sarai_noma_2004.fourState
Class NaChannel

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.sarai_noma_2004.fourState.ODE
                      org.simBio.bio.sarai_noma_2004.fourState.MonteCarlo
                          org.simBio.bio.sarai_noma_2004.fourState.NaChannel

All Implemented Interfaces:

Node

public class NaChannel
extends MonteCarlo

4 state gate of fast Sodium channel calculated by Monte Carlo method and ordinary differential Equations. Separated into three classes.

copyright (c) 2003/10/28

affiliation Department of Pysiology, Kyoto Graduate School of Medicine, Kyoto Japan

Version:

$Revision: 1.1 $ Created on 2003/10/28

Author:

Nobuaki Sarai

Field Summary

Fields inherited from class org.simBio.bio.sarai_noma_2004.fourState.ODE

pAI, pAP, pRP

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

NaChannel()

Method Summary

protected void	calculate(double t) calculate state probability by ODE.
protected void	prepare() read initial values from GUI.
protected void	setLinks() set arias for gates

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Constructor Detail

NaChannel

public NaChannel()

Method Detail

setLinks

protected void setLinks()

Description copied from class: ODE

set arias for gates

Overrides:

setLinks in class MonteCarlo

See Also:

Component.setLinks()

prepare

protected void prepare()

read initial values from GUI.

Overrides:

prepare in class MonteCarlo

See Also:

Component.prepare()

calculate

protected void calculate(double t)

calculate state probability by ODE.

Overrides:

calculate in class MonteCarlo

Parameters:

t -