org.simBio.bio.himeno_et_al_2008
Class Ist

java.lang.Object
  extended by org.simBio.core.Component
      extended by org.simBio.core.Parameter
          extended by org.simBio.core.Composite
              extended by org.simBio.core.Reactor
                  extended by org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter
                      extended by org.simBio.bio.terashima_et_al_2006.current.MembraneTransporter
                          extended by org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel
                              extended by org.simBio.bio.himeno_et_al_2008.Ist
All Implemented Interfaces:
Node

public class Ist
extends CfChannel

Sustained inward current for pacemaker model. PKA factor is incorporated.

Version:
$Id: Ist.java,v 1.1 2008/02/04 02:22:25 mikaelwing Exp $
Author:
Himeno
See Also:
org.simBio.matsuoka_et_al_2003.current.Ist

Field Summary
 Node activation
          gate variable
 double amplitudePKAf
          to modulate PKA effect
 Node Cai
          intracellular calcium concentration (mM)
 Node inactivation
          gate variable
 double max
          PKA phosphorylate
 Node PKA
          PKA catalitic domain I concentration
 double PKA0
           
 Node slowInactivation
          gate variable
 Node Vm
          membrane potential (mV)
 double Vshift
          a shift of activation potential for 4 state voltage gate
 
Fields inherited from class org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel
Cm, constantFieldCa, constantFieldCl, constantFieldK, constantFieldNa, permeabilityCa, permeabilityCl, permeabilityK, permeabilityNa, pOpen
 
Fields inherited from class org.simBio.bio.terashima_et_al_2006.current.MembraneTransporter
cCl, CCl, currentCl
 
Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter
cCa, CCa, cK, CK, cNa, CNa, current, currentCa, currentK, currentNa, total
 
Fields inherited from class org.simBio.core.Parameter
value
 
Constructor Summary
Ist()
           
 
Method Summary
protected  void calculate(double t)
          add Cl current to Compartment.
 
Methods inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter
prepare
 
Methods inherited from class org.simBio.core.Composite
accept, getLink, getNode, getNodesIterator, getNodesSize
 
Methods inherited from class org.simBio.core.Parameter
addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField
 
Methods inherited from class org.simBio.core.Component
addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface org.simBio.core.Node
addDydt, addValue, getValue, setValue
 

Field Detail

max

public double max
PKA phosphorylate


PKA

public Node PKA
PKA catalitic domain I concentration


PKA0

public double PKA0

Vm

public Node Vm
membrane potential (mV)


Cai

public Node Cai
intracellular calcium concentration (mM)


Vshift

public double Vshift
a shift of activation potential for 4 state voltage gate


activation

public Node activation
gate variable


inactivation

public Node inactivation
gate variable


slowInactivation

public Node slowInactivation
gate variable


amplitudePKAf

public double amplitudePKAf
to modulate PKA effect

Constructor Detail

Ist

public Ist()
Method Detail

calculate

protected void calculate(double t)
Description copied from class: MembraneTransporter
add Cl current to Compartment.

Overrides:
calculate in class CfChannel
Parameters:
t - time
See Also:
CfChannel.calculate(double)


Copyright © 2002-2008 Cell/Biodinamics simulation project. All Rights Reserved.