Hierarchy For All Packages

Package Hierarchies:

org.simBio, org.simBio.bio, org.simBio.bio.cor, org.simBio.bio.faber_rudy_2000.current, org.simBio.bio.faber_rudy_2000.function, org.simBio.bio.faber_rudy_2000.molecule, org.simBio.bio.faber_rudy_2000.structure, org.simBio.bio.function, org.simBio.bio.henriquez_et_al_2001, org.simBio.bio.himeno_et_al_2008, org.simBio.bio.hodgkin_huxley_1952, org.simBio.bio.kurata_et_al_2005.complex, org.simBio.bio.kurata_et_al_2005.current, org.simBio.bio.kurata_et_al_2005.flux, org.simBio.bio.kurata_et_al_2005.molecule, org.simBio.bio.kuratomi_et_al_2003.current.carrier, org.simBio.bio.kuzumoto_et_al_2007.contraction, org.simBio.bio.kuzumoto_et_al_2007.current, org.simBio.bio.kuzumoto_et_al_2007.current.carrier, org.simBio.bio.kuzumoto_et_al_2007.current.cf, org.simBio.bio.kuzumoto_et_al_2007.function, org.simBio.bio.kuzumoto_et_al_2007.molecule, org.simBio.bio.matsuoka_et_al_2003, org.simBio.bio.matsuoka_et_al_2003.complex, org.simBio.bio.matsuoka_et_al_2003.current, org.simBio.bio.matsuoka_et_al_2003.current.carrier, org.simBio.bio.matsuoka_et_al_2003.current.cf, org.simBio.bio.matsuoka_et_al_2003.current.channel, org.simBio.bio.matsuoka_et_al_2003.current.pipette, org.simBio.bio.matsuoka_et_al_2003.current.potassium, org.simBio.bio.matsuoka_et_al_2003.function, org.simBio.bio.matsuoka_et_al_2003.molecule.buffer, org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca, org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme, org.simBio.bio.matsuoka_et_al_2004.current.carrier, org.simBio.bio.matsuoka_et_al_2004.exp, org.simBio.bio.matsuoka_et_al_2004.function, org.simBio.bio.matsuoka_et_al_2004.function.chemical, org.simBio.bio.matsuoka_et_al_2004.molecule, org.simBio.bio.matsuoka_et_al_2004.molecule.buffer, org.simBio.bio.matsuoka_et_al_2004.molecule.buffer.Ca, org.simBio.bio.matsuoka_et_al_2004.molecule.enzyme, org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain, org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter, org.simBio.bio.negroni_lascano_1996, org.simBio.bio.negroni_lascano_1996.exp, org.simBio.bio.noble_et_al_1998, org.simBio.bio.oka_et_al_2006.function, org.simBio.bio.oka_et_al_2006.function.kinetics, org.simBio.bio.oka_et_al_2006.structure, org.simBio.bio.sarai_et_al_2003, org.simBio.bio.sarai_et_al_2003.figure, org.simBio.bio.sarai_et_al_2006.current.carrier, org.simBio.bio.sarai_et_al_2006.current.cf, org.simBio.bio.sarai_et_al_2006.figure, org.simBio.bio.sarai_et_al_2006.function, org.simBio.bio.sarai_noma_2004, org.simBio.bio.sarai_noma_2004.fourState, org.simBio.bio.sarai_noma_2004.structure, org.simBio.bio.takeuchi_et_al_2006.current, org.simBio.bio.takeuchi_et_al_2006.function, org.simBio.bio.tenTusscher_et_al_2004.complex, org.simBio.bio.tenTusscher_et_al_2004.current, org.simBio.bio.tenTusscher_et_al_2004.current.carrier, org.simBio.bio.tenTusscher_et_al_2004.current.pipette, org.simBio.bio.tenTusscher_et_al_2004.flux, org.simBio.bio.tenTusscher_et_al_2004.function, org.simBio.bio.terashima_et_al_2006.complex, org.simBio.bio.terashima_et_al_2006.current, org.simBio.bio.terashima_et_al_2006.current.carrier, org.simBio.bio.terashima_et_al_2006.current.cf, org.simBio.bio.terashima_et_al_2006.current.channel, org.simBio.bio.terashima_et_al_2006.current.potassium, org.simBio.bio.terashima_et_al_2006.experiment, org.simBio.bio.terashima_et_al_2006.function, org.simBio.core, org.simBio.core.integrator, org.simBio.serialize, org.simBio.serialize.xml, org.simBio.sim.analyzer, org.simBio.sim.analyzer.csv, org.simBio.sim.analyzer.csv.keep, org.simBio.sim.analyzer.csv.result, org.simBio.sim.analyzer.graph, org.simBio.sim.analyzer.graph.plot, org.simBio.sim.analyzer.graph.results, org.simBio.sim.analyzer.graph.simple, org.simBio.sim.analyzer.measure, org.simBio.sim.dm, org.simBio.sim.dm.exchange, org.simBio.sim.dm.util, org.simBio.sim.gui, org.simBio.sim.gui.toolKit, org.simBio.sim.gui.toolKit.dndmenu, org.simBio.sim.js, org.simBio.sim.js.entry, org.simBio.sim.js.jini, org.simBio.sim.ps, org.simBio.sim.ps.serialize, org.simBio.sim.ps.view, org.simBio.tools.remote, org.simBio.tools.remote.process, org.simBio.util, org.simBio.util.numerical, org.simBio.util.numerical.methods, org.simBio.util.taglets

Class Hierarchy

• java.lang.Object
  • javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
    • org.simBio.sim.gui.toolKit.dndmenu.DnDAction
  • org.simBio.tools.remote.process.AbstractAfterProcess
    • org.simBio.tools.remote.process.DefaultAfterProcess
    • org.simBio.tools.remote.process.WorkerStatus
  • java.util.AbstractCollection (implements java.util.Collection)
    • java.util.AbstractList (implements java.util.List)
      • java.util.ArrayList (implements java.lang.Cloneable, java.util.List, java.util.RandomAccess, java.io.Serializable)
        • org.simBio.core.ReactorList
        • org.simBio.core.VariableList
          • org.simBio.core.integrator.EulerList
          • org.simBio.core.integrator.RungeKuttaList
  • org.simBio.sim.analyzer.graph.plot.AbstractPlot (implements org.simBio.sim.analyzer.graph.plot.IPlot)
    • org.simBio.sim.analyzer.graph.plot.PlotDisplay
    • org.simBio.sim.analyzer.graph.plot.PlotPrinter
  • ApplicationFrame
    • org.simBio.sim.ps.view.AbstractPlot
      • org.simBio.sim.ps.view.PlotContour
      • org.simBio.sim.ps.view.PlotLine
      • org.simBio.sim.ps.view.PlotTimeSeries
  • org.simBio.bio.sarai_et_al_2006.figure.ATPonNCXvsPMCA
  • org.simBio.sim.analyzer.graph.plot.AttributeString
  • org.simBio.util.numerical.methods.BroydenMethod
  • org.simBio.sim.analyzer.graph.results.CachedBuffer
  • org.simBio.bio.sarai_et_al_2006.figure.CaFigure
    • org.simBio.bio.sarai_et_al_2006.figure.CaLvsPMCAwoNCX
    • org.simBio.bio.sarai_et_al_2006.figure.NCXvsCaL
    • org.simBio.bio.sarai_et_al_2006.figure.NCXvsPMCA
  • org.simBio.sim.js.entry.Canceled
  • org.simBio.sim.js.Channel
  • org.simBio.serialize.Collector (implements org.simBio.core.Visitor)
  • org.simBio.sim.analyzer.graph.ColorUtil
  • org.simBio.tools.remote.CommandServer
  • org.simBio.tools.remote.CommandServerUtil
  • org.simBio.core.Component (implements org.simBio.core.Node)
    • org.simBio.core.Link
    • org.simBio.core.Parameter
      • org.simBio.core.Composite (implements org.simBio.core.Node)
        • org.simBio.core.Analyzer
          • org.simBio.sim.analyzer.csv.result.AbstractAppender
            • org.simBio.sim.analyzer.csv.result.ALaCarte
              • org.simBio.sim.analyzer.csv.keep.ParamEvalKeeper (implements org.simBio.sim.ps.IEvals, org.simBio.sim.ps.IKeys)
          • org.simBio.sim.analyzer.measure.AbstractMeasure
            • org.simBio.sim.analyzer.measure.Amplitude
            • org.simBio.sim.analyzer.measure.AmplitudeInCycle
            • org.simBio.sim.analyzer.measure.APDforSA
              • org.simBio.sim.analyzer.measure.APDforSA2
            • org.simBio.sim.analyzer.measure.HR
            • org.simBio.sim.analyzer.measure.LeadPotential
            • org.simBio.sim.analyzer.measure.Limitter
            • org.simBio.sim.analyzer.measure.PeakDetect
            • org.simBio.sim.analyzer.graph.simple.RelationGraph_LP
            • org.simBio.sim.analyzer.measure.Sum
            • org.simBio.sim.analyzer.csv.keep.TimeSeriesKeeper (implements org.simBio.sim.ps.ITimeSeries)
            • org.simBio.sim.analyzer.measure.VmaxTime
          • org.simBio.sim.analyzer.measure.APD
          • org.simBio.sim.analyzer.graph.simple.Axis
            • org.simBio.sim.analyzer.graph.simple.AxisX
            • org.simBio.sim.analyzer.graph.simple.AxisXFix
            • org.simBio.sim.analyzer.graph.simple.AxisY
          • org.simBio.sim.analyzer.csv.CsvMaker
            • org.simBio.sim.analyzer.csv.ALaCarte
            • org.simBio.sim.analyzer.csv.Siblings
            • org.simBio.sim.analyzer.csv.Total (implements org.simBio.core.Visitor)
          • org.simBio.sim.analyzer.graph.simple.Graph
            • org.simBio.sim.analyzer.graph.simple.Graph4State
            • org.simBio.sim.analyzer.graph.simple.StepChart
          • org.simBio.sim.analyzer.graph.simple.RelationGraph
          • org.simBio.sim.analyzer.StopWatch
          • org.simBio.sim.analyzer.graph.simple.Viewer (implements org.simBio.sim.analyzer.graph.simple.ICanvas, org.simBio.sim.analyzer.graph.IViewer)
            • org.simBio.sim.analyzer.graph.simple.RateGraph
            • org.simBio.sim.analyzer.graph.simple.RateGraph_KA
          • org.simBio.sim.analyzer.VisualizeAnalyzer
            • org.simBio.sim.analyzer.graph.AbstractGraph
              • org.simBio.sim.analyzer.graph.BasicGraph
                • org.simBio.sim.analyzer.graph.Graph
                  • org.simBio.sim.analyzer.graph.Graph4State
                  • org.simBio.sim.analyzer.graph.StepChart
                • org.simBio.sim.analyzer.graph.RelationGraph
            • org.simBio.sim.analyzer.graph.Axis
              • org.simBio.sim.analyzer.graph.AxisX
                • org.simBio.sim.analyzer.graph.AxisXFix
                  • org.simBio.sim.analyzer.graph.AxisXLog
              • org.simBio.sim.analyzer.graph.AxisY
                • org.simBio.sim.analyzer.graph.AxisYLog
            • org.simBio.sim.analyzer.graph.Viewer (implements org.simBio.sim.analyzer.graph.IViewer)
          • org.simBio.sim.analyzer.measure.Vmax
        • org.simBio.util.numerical.MathFunction
        • org.simBio.util.numerical.MathMultivariableFunction
        • org.simBio.util.numerical.MathUnivariableFunction
          • org.simBio.bio.kuzumoto_et_al_2007.contraction.CrossBridgeForce
          • org.simBio.bio.kuzumoto_et_al_2007.contraction.ForceEquilibrium
          • org.simBio.bio.kuzumoto_et_al_2007.contraction.ParallelElementForce
        • org.simBio.core.Reactor
          • org.simBio.bio.matsuoka_et_al_2004.function.Acidity
          • org.simBio.bio.matsuoka_et_al_2004.molecule.enzyme.AK
          • org.simBio.bio.terashima_et_al_2006.function.AmplitudeNaK
          • org.simBio.bio.matsuoka_et_al_2004.exp.Anoxia
          • org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter.ANT
          • org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ATPsynthase
          • org.simBio.bio.matsuoka_et_al_2003.complex.ATPsynthesis
          • org.simBio.bio.kuzumoto_et_al_2007.function.Average
            • org.simBio.bio.kuzumoto_et_al_2007.function.PA2MS
          • org.simBio.bio.kuzumoto_et_al_2007.molecule.BetaAR_Gs
          • org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer
            • org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.Analytic
            • org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.Analytic_RK
            • org.simBio.bio.kurata_et_al_2005.molecule.CaBuffer_RK
            • org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.InstantCaBuffer
            • org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.ODE
            • org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL
              • org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL_RK
                • org.simBio.bio.matsuoka_et_al_2004.molecule.buffer.Ca.TroponinNL_RK
          • org.simBio.bio.faber_rudy_2000.molecule.CaBuffer
          • org.simBio.bio.kuzumoto_et_al_2007.molecule.CAMP
          • org.simBio.bio.matsuoka_et_al_2003.function.Charge (implements org.simBio.core.IResetBeforeCalc)
          • org.simBio.bio.tenTusscher_et_al_2004.function.Charge (implements org.simBio.core.IResetBeforeCalc)
          • org.simBio.bio.matsuoka_et_al_2004.molecule.enzyme.CK
          • org.simBio.bio.matsuoka_et_al_2004.function.chemical.CN
          • org.simBio.bio.Compartment
            • org.simBio.bio.faber_rudy_2000.structure.Cell
            • org.simBio.bio.oka_et_al_2006.structure.GapJunction
              • org.simBio.bio.oka_et_al_2006.structure.GapJunctionK
            • org.simBio.bio.sarai_noma_2004.structure.GapJunction
            • org.simBio.bio.faber_rudy_2000.structure.JSR
            • org.simBio.bio.faber_rudy_2000.structure.NSR
          • org.simBio.bio.matsuoka_et_al_2003.Compartment
          • org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ComplexI
          • org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ComplexIII
          • org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ComplexIV
          • org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationCyta2
          • org.simBio.core.Conductor (implements java.lang.Runnable, org.simBio.core.Visitor)
          • org.simBio.bio.matsuoka_et_al_2003.function.ConstantField
          • org.simBio.bio.negroni_lascano_1996.CrossBridge
            • org.simBio.bio.negroni_lascano_1996.exp.IsotonicContraction
          • org.simBio.bio.kuzumoto_et_al_2007.contraction.CrossBridgeLength
          • org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme.CrossBridgeNL
            • org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme.IsometricContraction
            • org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme.IsotonicContraction
          • org.simBio.bio.faber_rudy_2000.current.Current
            • org.simBio.bio.faber_rudy_2000.current.ICaL
            • org.simBio.bio.faber_rudy_2000.current.ICaT
            • org.simBio.bio.faber_rudy_2000.current.IK1
            • org.simBio.bio.faber_rudy_2000.current.IKpl
            • org.simBio.bio.faber_rudy_2000.current.IKr
            • org.simBio.bio.faber_rudy_2000.current.IKs
            • org.simBio.bio.faber_rudy_2000.current.INa
            • org.simBio.bio.faber_rudy_2000.current.INaCa
            • org.simBio.bio.faber_rudy_2000.current.INaK
            • org.simBio.bio.faber_rudy_2000.current.IpCa
          • org.simBio.bio.matsuoka_et_al_2003.function.Current (implements org.simBio.core.IResetBeforeCalc)
          • org.simBio.bio.tenTusscher_et_al_2004.function.Current (implements org.simBio.core.IResetBeforeCalc)
          • org.simBio.bio.faber_rudy_2000.function.Diffusion
          • org.simBio.bio.matsuoka_et_al_2003.function.Diffusion
          • org.simBio.bio.matsuoka_et_al_2004.molecule.Diffusion
          • org.simBio.bio.matsuoka_et_al_2003.function.Diffusion_a
          • org.simBio.bio.matsuoka_et_al_2003.function.Diffusion_t
          • org.simBio.bio.faber_rudy_2000.molecule.DualCaBuffer
          • org.simBio.bio.takeuchi_et_al_2006.function.Electroneutrality
          • org.simBio.bio.takeuchi_et_al_2006.function.ENaCa
          • org.simBio.bio.matsuoka_et_al_2004.function.chemical.FCCP
          • org.simBio.bio.function.Function
            • org.simBio.bio.function.Analytic2state
            • org.simBio.bio.oka_et_al_2006.function.kinetics.IndependentGate
            • org.simBio.bio.oka_et_al_2006.function.JunctionalPotential
            • org.simBio.bio.terashima_et_al_2006.function.KoDependency
            • org.simBio.bio.kuzumoto_et_al_2007.function.KoDependency_IK1
            • org.simBio.bio.terashima_et_al_2006.function.KoDependency2
            • org.simBio.bio.oka_et_al_2006.function.kinetics.RateConstantCaGate
            • org.simBio.bio.function.StepChanger
            • org.simBio.bio.terashima_et_al_2006.function.Tonicity
            • org.simBio.bio.terashima_et_al_2006.function.Volume
          • org.simBio.bio.henriquez_et_al_2001.GapJunction
          • org.simBio.bio.matsuoka_et_al_2004.function.GradientP
          • org.simBio.bio.matsuoka_et_al_2004.function.GradientpH
          • org.simBio.bio.matsuoka_et_al_2004.molecule.buffer.HBuffering
          • org.simBio.bio.cor.Hodgkin_huxley_squid_axon_1952_modified
          • org.simBio.bio.hodgkin_huxley_1952.I_K
          • org.simBio.bio.hodgkin_huxley_1952.I_L
          • org.simBio.bio.hodgkin_huxley_1952.I_Na
          • org.simBio.bio.hodgkin_huxley_1952.I_stim
          • org.simBio.bio.kuzumoto_et_al_2007.contraction.IsotonicContraction
          • org.simBio.bio.oka_et_al_2006.function.JunctionalConductance
          • org.simBio.bio.matsuoka_et_al_2003.function.KoDependency
          • org.simBio.bio.negroni_lascano_1996.exp.LChange
          • org.simBio.bio.kurata_et_al_2005.flux.Leak
          • org.simBio.bio.tenTusscher_et_al_2004.flux.Leak
          • org.simBio.bio.matsuoka_et_al_2004.function.MassConservation
          • org.simBio.bio.matsuoka_et_al_2004.function.MassConservation2
            • org.simBio.bio.kuzumoto_et_al_2007.function.ConcentrationAMP
            • org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationAMP
            • org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationPi
          • org.simBio.bio.hodgkin_huxley_1952.Membrane
          • org.simBio.bio.matsuoka_et_al_2004.function.MembranePotential
          • org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter
            • org.simBio.bio.kuratomi_et_al_2003.current.carrier.Carrier
              • org.simBio.bio.kuratomi_et_al_2003.current.carrier.INaCa
            • org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier
              • org.simBio.bio.kuzumoto_et_al_2007.current.carrier.ICaPump
              • org.simBio.bio.matsuoka_et_al_2003.current.carrier.ICaPump
                • org.simBio.bio.matsuoka_et_al_2004.current.carrier.ICaPump
              • org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaCa
              • org.simBio.bio.kuzumoto_et_al_2007.current.carrier.INaK
              • org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaK
                • org.simBio.bio.matsuoka_et_al_2004.current.carrier.INaK
                • org.simBio.bio.terashima_et_al_2006.current.carrier.INaK
              • org.simBio.bio.kuzumoto_et_al_2007.current.carrier.IPMCA
              • org.simBio.bio.sarai_et_al_2006.current.carrier.IPMCA
            • org.simBio.bio.tenTusscher_et_al_2004.current.carrier.Carrier
              • org.simBio.bio.tenTusscher_et_al_2004.current.carrier.INaCa
              • org.simBio.bio.tenTusscher_et_al_2004.current.carrier.INaK
            • org.simBio.bio.matsuoka_et_al_2003.current.cf.CfChannel
              • org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaL
                • org.simBio.bio.sarai_et_al_2003.ICaL
              • org.simBio.bio.sarai_et_al_2006.current.cf.ICaL
              • org.simBio.bio.matsuoka_et_al_2003.current.cf.ICaT
              • org.simBio.bio.matsuoka_et_al_2003.current.cf.Iha
              • org.simBio.bio.matsuoka_et_al_2003.current.cf.IKpl
              • org.simBio.bio.matsuoka_et_al_2003.current.potassium.IKs
              • org.simBio.bio.matsuoka_et_al_2003.current.cf.ILCCa
              • org.simBio.bio.matsuoka_et_al_2003.current.cf.INa
              • org.simBio.bio.matsuoka_et_al_2003.current.cf.Ist
                • org.simBio.bio.sarai_et_al_2003.Ist
              • org.simBio.bio.matsuoka_et_al_2003.current.cf.Ito
            • org.simBio.bio.matsuoka_et_al_2003.current.channel.Channel
              • org.simBio.bio.matsuoka_et_al_2003.current.channel.IRyR
                • org.simBio.bio.terashima_et_al_2006.current.channel.IRyR
            • org.simBio.bio.matsuoka_et_al_2003.current.Diffusion
            • org.simBio.bio.tenTusscher_et_al_2004.current.IbCa
            • org.simBio.bio.tenTusscher_et_al_2004.current.IbNa
            • org.simBio.bio.tenTusscher_et_al_2004.current.ICa
            • org.simBio.bio.kurata_et_al_2005.current.ICab
            • org.simBio.bio.kurata_et_al_2005.current.ICaL
            • org.simBio.bio.kurata_et_al_2005.current.IK1
            • org.simBio.bio.tenTusscher_et_al_2004.current.IK1
            • org.simBio.bio.kurata_et_al_2005.current.IKr
            • org.simBio.bio.tenTusscher_et_al_2004.current.IKr
            • org.simBio.bio.kurata_et_al_2005.current.IKs
            • org.simBio.bio.tenTusscher_et_al_2004.current.IKs
            • org.simBio.bio.kurata_et_al_2005.current.INa
            • org.simBio.bio.tenTusscher_et_al_2004.current.INa
            • org.simBio.bio.kurata_et_al_2005.current.INab
            • org.simBio.bio.kurata_et_al_2005.current.INaCa
            • org.simBio.bio.takeuchi_et_al_2006.current.INaCa
            • org.simBio.bio.kurata_et_al_2005.current.INaK
            • org.simBio.bio.kurata_et_al_2005.current.IpCa
            • org.simBio.bio.tenTusscher_et_al_2004.current.IpCa
            • org.simBio.bio.tenTusscher_et_al_2004.current.IpK
            • org.simBio.bio.kuzumoto_et_al_2007.current.IRyR
            • org.simBio.bio.takeuchi_et_al_2006.current.IRyR
            • org.simBio.bio.kurata_et_al_2005.current.Ito
            • org.simBio.bio.tenTusscher_et_al_2004.current.Ito
            • org.simBio.bio.tenTusscher_et_al_2004.current.Ito_endo
            • org.simBio.bio.terashima_et_al_2006.current.MembraneTransporter
              • org.simBio.bio.terashima_et_al_2006.current.cf.CfChannel
                • org.simBio.bio.himeno_et_al_2008.ICaL
                • org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICaL
                • org.simBio.bio.terashima_et_al_2006.current.cf.ICaL
                • org.simBio.bio.terashima_et_al_2006.current.cf.ICaT
                • org.simBio.bio.kuzumoto_et_al_2007.current.cf.ICFTR
                • org.simBio.bio.terashima_et_al_2006.current.cf.ICFTR
                • org.simBio.bio.terashima_et_al_2006.current.cf.IClb
                • org.simBio.bio.himeno_et_al_2008.Iha
                • org.simBio.bio.terashima_et_al_2006.current.cf.Iha
                • org.simBio.bio.terashima_et_al_2006.current.cf.IKpl
                • org.simBio.bio.himeno_et_al_2008.IKs
                • org.simBio.bio.kuzumoto_et_al_2007.current.cf.IKs
                • org.simBio.bio.terashima_et_al_2006.current.potassium.IKs
                • org.simBio.bio.terashima_et_al_2006.current.cf.ILCCa
                • org.simBio.bio.terashima_et_al_2006.current.cf.INa
                • org.simBio.bio.terashima_et_al_2006.current.cf.INab
                • org.simBio.bio.himeno_et_al_2008.Ist
                • org.simBio.bio.terashima_et_al_2006.current.cf.Ist
                • org.simBio.bio.terashima_et_al_2006.current.cf.Ito
                • org.simBio.bio.terashima_et_al_2006.current.cf.IVRCC
              • org.simBio.bio.takeuchi_et_al_2006.current.CfChannel
                • org.simBio.bio.takeuchi_et_al_2006.current.ICaL
              • org.simBio.bio.terashima_et_al_2006.current.Diffusion
              • org.simBio.bio.terashima_et_al_2006.current.carrier.NKCC
              • org.simBio.bio.takeuchi_et_al_2006.current.PMCA
              • org.simBio.bio.terashima_et_al_2006.current.potassium.PureKchannel
                • org.simBio.bio.kuzumoto_et_al_2007.current.IK1
                • org.simBio.bio.terashima_et_al_2006.current.potassium.IK1
                • org.simBio.bio.himeno_et_al_2008.IKACh
                • org.simBio.bio.terashima_et_al_2006.current.potassium.IKATP
                • org.simBio.bio.terashima_et_al_2006.current.potassium.IKr
            • org.simBio.bio.matsuoka_et_al_2003.current.pipette.Pipette
              • org.simBio.bio.matsuoka_et_al_2003.current.pipette.CurrentClamp
              • org.simBio.bio.matsuoka_et_al_2003.current.pipette.VoltageClamp
            • org.simBio.bio.tenTusscher_et_al_2004.current.pipette.Pipette
              • org.simBio.bio.tenTusscher_et_al_2004.current.pipette.CurrentClamp
            • org.simBio.bio.matsuoka_et_al_2003.current.potassium.PureKchannel
              • org.simBio.bio.matsuoka_et_al_2003.current.potassium.IK1
              • org.simBio.bio.matsuoka_et_al_2003.current.potassium.IKACh
              • org.simBio.bio.matsuoka_et_al_2003.current.potassium.IKATP
              • org.simBio.bio.matsuoka_et_al_2003.current.potassium.IKr
            • org.simBio.bio.sarai_et_al_2003.VoltageClamp
          • org.simBio.bio.matsuoka_et_al_2004.function.MetalFreeConcentration
          • org.simBio.bio.negroni_lascano_1996.exp.Model
          • org.simBio.bio.noble_et_al_1998.Model
          • org.simBio.bio.oka_et_al_2006.function.kinetics.MultiStateModel (implements org.simBio.core.IResetBeforeCalc)
          • org.simBio.bio.faber_rudy_2000.current.NSRLeak
          • org.simBio.bio.sarai_noma_2004.fourState.ODE
            • org.simBio.bio.sarai_noma_2004.fourState.MonteCarlo
              • org.simBio.bio.sarai_noma_2004.fourState.NaChannel
          • org.simBio.bio.takeuchi_et_al_2006.function.Ouabain
          • org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.OxidativePhosphorylation
          • org.simBio.bio.parabola
          • org.simBio.bio.matsuoka_et_al_2004.function.PartialPotential
          • org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter.PhosphateCarrier
          • org.simBio.bio.kuzumoto_et_al_2007.molecule.PKA
          • org.simBio.bio.kuzumoto_et_al_2007.molecule.PLB
          • org.simBio.bio.matsuoka_et_al_2004.function.PressureToConcentration
          • org.simBio.bio.matsuoka_et_al_2004.molecule.Transporter.ProtonLeak
          • org.simBio.bio.negroni_lascano_1996.Qpump
          • org.simBio.bio.negroni_lascano_1996.Qrel
          • org.simBio.bio.sarai_et_al_2006.function.Rate
          • org.simBio.bio.matsuoka_et_al_2003.function.RateConstant
            • org.simBio.bio.matsuoka_et_al_2003.function.RateConstantK
            • org.simBio.bio.matsuoka_et_al_2003.function.RateConstantVm
          • org.simBio.bio.sarai_et_al_2006.function.Ratio
          • org.simBio.bio.matsuoka_et_al_2004.function.RedoxPotential
          • org.simBio.bio.matsuoka_et_al_2004.function.RedoxPotentialCyta
          • org.simBio.bio.kurata_et_al_2005.flux.Release
          • org.simBio.bio.tenTusscher_et_al_2004.flux.Release
          • org.simBio.bio.matsuoka_et_al_2003.function.ReversalPotential
          • org.simBio.bio.tenTusscher_et_al_2004.function.ReversalPotential2
          • org.simBio.bio.faber_rudy_2000.current.RyR
          • org.simBio.bio.kurata_et_al_2005.complex.SR
          • org.simBio.bio.tenTusscher_et_al_2004.complex.SR
          • org.simBio.bio.faber_rudy_2000.current.SRCA
          • org.simBio.bio.terashima_et_al_2006.experiment.StepChanger
          • org.simBio.bio.terashima_et_al_2006.experiment.StepChanger2
          • org.simBio.bio.faber_rudy_2000.function.Stimulus
          • org.simBio.bio.matsuoka_et_al_2004.molecule.SubstrateDehydrogenation
          • org.simBio.bio.terashima_et_al_2006.experiment.TonicityChange
          • org.simBio.bio.terashima_et_al_2006.function.TotalVolume
          • org.simBio.bio.kurata_et_al_2005.flux.Transfer
          • org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponin
            • org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponinmit
          • org.simBio.bio.negroni_lascano_1996.Troponin
          • org.simBio.bio.oka_et_al_2006.function.kinetics.TwoStateModel
          • org.simBio.bio.kurata_et_al_2005.flux.Uptake
          • org.simBio.bio.tenTusscher_et_al_2004.flux.UpTake
          • org.simBio.bio.cor.Vanderpol_model_1928
          • org.simBio.bio.sarai_noma_2004.VoltageClamp
          • org.simBio.bio.matsuoka_et_al_2003.function.Volume
          • org.simBio.bio.matsuoka_et_al_2004.function.VolumeRatio
          • org.simBio.bio.terashima_et_al_2006.experiment.VolumeRatio
          • org.simBio.bio.terashima_et_al_2006.complex.WaterFlux
          • org.simBio.bio.matsuoka_et_al_2004.function.Zvalue
      • org.simBio.core.integrator.Euler (implements org.simBio.core.Variable)
        • org.simBio.core.integrator.Positive
          • org.simBio.core.integrator.Concentration
          • org.simBio.core.integrator.Probability
      • org.simBio.core.integrator.RungeKutta (implements org.simBio.core.Variable)
        • org.simBio.core.integrator.PositiveRK
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
          • javax.swing.JButton (implements javax.accessibility.Accessible)
            • org.simBio.sim.gui.toolKit.dndmenu.DnDJButton
        • javax.swing.JList (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • org.simBio.sim.gui.toolKit.dndmenu.DnDJList
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • org.simBio.sim.gui.CheckedJTree.CheckedJTreeCellRenderer (implements javax.swing.tree.TreeCellEditor, javax.swing.tree.TreeCellRenderer)
          • org.simBio.sim.gui.GUI.JPrintablePanel (implements java.awt.print.Printable)
        • javax.swing.JTable (implements javax.accessibility.Accessible, javax.swing.event.CellEditorListener, javax.swing.event.ListSelectionListener, javax.swing.Scrollable, javax.swing.event.TableColumnModelListener, javax.swing.event.TableModelListener)
          • sun.JTreeTable.JTreeTable
            • org.simBio.sim.gui.JTreeTableSimBio
        • javax.swing.JToolBar (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • org.simBio.sim.gui.toolKit.dndmenu.DnDJToolBar (implements org.simBio.sim.gui.toolKit.dndmenu.DnDActionDroppable)
        • javax.swing.JTree (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • org.simBio.sim.gui.CheckedJTree
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • org.simBio.sim.gui.toolKit.HTMLViewJDialog
            • org.simBio.sim.gui.toolKit.dndmenu.ToolBarMente
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • org.simBio.sim.gui.GUI (implements org.simBio.core.Visitor)
            • org.simBio.sim.analyzer.graph.OnScreen
            • org.simBio.tools.remote.RemoteGui (implements java.awt.event.ActionListener)
  • org.simBio.Composer
  • org.simBio.sim.gui.Constant
  • org.simBio.sim.gui.CsvDialog
  • org.simBio.util.CsvHandler
  • org.simBio.sim.gui.DataListTable (implements org.simBio.core.Visitor)
  • org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
    • org.xml.sax.ext.DefaultHandler2 (implements org.xml.sax.ext.DeclHandler, org.xml.sax.ext.EntityResolver2, org.xml.sax.ext.LexicalHandler)
      • org.simBio.serialize.xml.LogSax2
        • org.simBio.sim.ps.serialize.TocReader
  • org.simBio.util.DevelopmentMode
  • org.simBio.sim.gui.toolKit.dndmenu.DnDTransferBean (implements java.awt.datatransfer.Transferable)
  • org.simBio.sim.dm.util.DOMHandler
  • org.simBio.Entry
  • org.simBio.sim.dm.exchange.Exchanger
    • org.simBio.sim.dm.exchange.FileNameExchanger
      • org.simBio.sim.dm.exchange.IndexNameExchanger
    • org.simBio.sim.dm.exchange.ListExchanger
      • org.simBio.sim.dm.exchange.OneTimeListExchanger
    • org.simBio.sim.dm.exchange.LogRatioExchanger
    • org.simBio.sim.dm.exchange.NullExchanger
    • org.simBio.sim.dm.exchange.NumericalExchanger
      • org.simBio.sim.dm.exchange.UniformRatioExchanger
      • org.simBio.sim.dm.exchange.UniformValueExchanger
    • org.simBio.sim.dm.exchange.SelectedValuesExchanger
  • org.simBio.sim.dm.exchange.ExchangerFactory
  • org.simBio.bio.sarai_et_al_2003.figure.Fig1
  • org.simBio.bio.sarai_et_al_2003.figure.Fig2A
  • org.simBio.bio.sarai_et_al_2003.figure.Fig2B
  • org.simBio.util.FileHandler
  • org.simBio.sim.analyzer.graph.GraphReplotBuffer
  • org.simBio.bio.sarai_et_al_2003.figure.HR_APD
  • org.simBio.sim.js.entry.Index
  • org.simBio.core.Initializer
  • java.io.InputStream (implements java.io.Closeable)
    • org.simBio.sim.dm.util.StringInputStream
  • org.simBio.JSEntry (implements java.lang.Runnable)
  • org.simBio.util.taglets.Languages
    • org.simBio.util.taglets.EnOff
    • org.simBio.util.taglets.EnOn
    • org.simBio.util.taglets.JaOff
    • org.simBio.util.taglets.JaOn
  • org.simBio.util.numerical.methods.LUdecomposition
  • javax.swing.event.MouseInputAdapter (implements javax.swing.event.MouseInputListener)
    • org.simBio.sim.gui.toolKit.dndmenu.DnDMouseMotionListener
  • org.simBio.sim.dm.util.NodeHandler
  • org.simBio.util.NodeHandler
  • org.simBio.sim.dm.ParameterChanger
  • org.simBio.sim.ps.ParameterSpace (implements org.simBio.sim.ps.ICollection, org.simBio.sim.ps.ICollector)
  • org.simBio.tools.remote.ParseNodeXML
  • org.simBio.sim.ps.serialize.ParseXMLs
  • org.simBio.sim.ps.serialize.ParseXMLs.NameVal
  • org.simBio.sim.ps.serialize.ParseXMLs.Result
  • org.simBio.sim.analyzer.graph.plot.PlotDisplay.LegendItem
  • org.simBio.sim.analyzer.graph.plot.PlotDisplay.TitleItem
  • org.simBio.sim.ps.view.PlotLouncher (implements org.simBio.sim.ps.IParamSpaceObserver)
  • org.simBio.sim.analyzer.graph.plot.PlotPrinter.LegendItem
  • org.simBio.sim.analyzer.graph.plot.PlotPrinter.TitleItem
  • org.simBio.sim.gui.PrintGraph
  • org.simBio.sim.js.entry.Processing
  • org.simBio.sim.js.ProcessorImpl (implements org.simBio.sim.js.Processor)
  • org.simBio.util.PropertyManager
  • org.simBio.tools.remote.PropertyManager
  • org.simBio.sim.dm.ProtocolParser
    • org.simBio.sim.js.JSProtocolParser
  • org.simBio.sim.js.entry.Receipt
  • org.simBio.tools.remote.RemoteConstant
  • org.simBio.sim.js.entry.Request
  • org.simBio.sim.ps.Result
  • org.simBio.sim.js.entry.Result
  • org.simBio.sim.js.Retriever
  • org.simBio.Run
    • org.simBio.ResultGenerator
  • org.simBio.RunGUI
  • org.simBio.util.numerical.methods.SecantMethod
  • org.simBio.serialize.SerializerFactory
  • org.simBio.sim.js.jini.ServiceLocator
  • org.simBio.sim.gui.toolKit.SimpleGUIFrameWork
  • org.simBio.tools.remote.SortStatus
  • org.simBio.sim.js.jini.SpaceLocator
  • org.simBio.sim.js.Stop
  • org.simBio.sim.js.Taker (implements java.lang.Runnable)
  • org.simBio.sim.analyzer.graph.results.TimeSeriesSingle
  • org.simBio.sim.analyzer.graph.results.TimeSeriesValues
  • org.simBio.sim.ps.serialize.TocWriter (implements org.simBio.sim.ps.IParamSpaceObserver)
    • org.simBio.sim.ps.serialize.TocParser
  • javax.swing.TransferHandler (implements java.io.Serializable)
    • org.simBio.sim.gui.toolKit.dndmenu.DnDTransferHandler
  • org.simBio.sim.js.Utils
  • org.simBio.sim.js.Worker (implements java.lang.Runnable)
  • org.simBio.sim.js.entry.WorkerId
  • org.simBio.XmlGenerator
  • org.simBio.serialize.xml.XMLSerializer (implements org.simBio.serialize.Serializer)

Interface Hierarchy

• org.simBio.core.CalculationObserver
• org.simBio.sim.gui.toolKit.dndmenu.DnDActionDroppable
• org.simBio.sim.analyzer.graph.simple.ICanvas
• org.simBio.sim.ps.ICollection
• org.simBio.sim.ps.ICollector
• org.simBio.sim.ps.IEvals
• org.simBio.sim.ps.IKeys
• org.simBio.sim.ps.IParamSpaceObserver
• org.simBio.sim.analyzer.graph.plot.IPlot
• org.simBio.sim.analyzer.graph.plot.IPlot.Item
• org.simBio.sim.ps.IReciever
• org.simBio.core.IResetBeforeCalc
• org.simBio.sim.ps.ITimeSeries
• org.simBio.sim.analyzer.graph.IViewer
• org.simBio.core.Node
  • org.simBio.core.Variable
• org.simBio.sim.js.Processor
• org.simBio.serialize.Serializer
• javax.swing.tree.TreeModel
  • org.simBio.sim.gui.CheckedJTreeModel
• org.simBio.sim.gui.ValueChangeObserver
• org.simBio.core.Visitor