A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

E

E - Variable in class org.simBio.bio.noble_et_al_1998.Model

E - Variable in class org.simBio.sim.analyzer.graph.simple.Axis

E1A - Variable in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.Carrier

probabilities at each state

E1A - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier

probabilities at each state

E1B - Variable in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.Carrier

probabilities at each state

E1B - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier

probabilities at each state

E2A - Variable in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.Carrier

probabilities at each state

E2A - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier

probabilities at each state

E2B - Variable in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.Carrier

probabilities at each state

E2B - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier

probabilities at each state

E_MAXIMUM - Static variable in class org.simBio.sim.ps.view.PlotLine

評価値の軸の最大値

E_MINIMUM - Static variable in class org.simBio.sim.ps.view.PlotLine

評価値の軸の最小値

E_R - Variable in class org.simBio.bio.hodgkin_huxley_1952.I_K

reversal potential (millivolt)

E_R - Variable in class org.simBio.bio.hodgkin_huxley_1952.I_L

reversal potential (millivolt)

E_R - Variable in class org.simBio.bio.hodgkin_huxley_1952.I_Na

reversal potential (millivolt)

ECa - Variable in class org.simBio.bio.takeuchi_et_al_2006.function.ENaCa

equilibrium potential for Ca²⁺ [mV]

eCa - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IbCa

eCa - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.ICa

ECa - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

ECaL - Variable in class org.simBio.bio.kurata_et_al_2005.current.ICaL

ECl - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

eK - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IK1

eK - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IKr

eK - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IpK

eK - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.Ito

eK - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.Ito_endo

EK - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

eKs - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IKs

elapsedTime - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.pipette.Pipette

elapsedTime - Variable in class org.simBio.bio.matsuoka_et_al_2004.exp.Anoxia

elapsedTime - Variable in class org.simBio.bio.negroni_lascano_1996.Qrel

elapsedTime - Variable in class org.simBio.bio.terashima_et_al_2006.experiment.TonicityChange

elapsedTime - Variable in class org.simBio.core.Conductor

elapsed time

elapsedTime - Variable in class org.simBio.sim.analyzer.csv.CsvMaker

elapsedTime - Variable in class org.simBio.sim.analyzer.csv.keep.TimeSeriesKeeper

elapsedTime - Variable in class org.simBio.sim.analyzer.graph.simple.AxisX

time at start integration

elapsedTime - Variable in class org.simBio.sim.analyzer.StopWatch

Electroneutrality - Class in org.simBio.bio.takeuchi_et_al_2006.function

Calculate difference between total amounts of cations and anions.

Electroneutrality() - Constructor for class org.simBio.bio.takeuchi_et_al_2006.function.Electroneutrality

elementDecl(String, String) - Method in class org.simBio.serialize.xml.LogSax2

Logs element names and models when debugging

Em0 - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.RedoxPotential

standard free-energy chage of reaction

Ema - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationCyta2

redox potential of cytochrome a

Ema0 - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationCyta2

standard free-energy change

Emc - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.RedoxPotentialCyta

redox potential of cytochrome c

Emc - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ComplexIII

redox potential for cytochrome c

EmN - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ComplexI

redox potential for NADH

EmU - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ComplexI

redox potential for ubiquinone

EmU - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.RespiratoryChain.ComplexIII

redox potential for ubiquinone

ENa - Variable in class org.simBio.bio.takeuchi_et_al_2006.function.ENaCa

equilibrium potential for Na⁺ [mV]

eNa - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.IbNa

eNa - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.INa

ENa - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

ENaCa - Class in org.simBio.bio.takeuchi_et_al_2006.function

equilibrium potential for Na⁺/Ca²⁺ exchanger.

ENaCa() - Constructor for class org.simBio.bio.takeuchi_et_al_2006.function.ENaCa

ENCODE_TYPE - Static variable in class org.simBio.tools.remote.RemoteConstant

end() - Method in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.Analytic

終了時にCaの値をバッファリングされた値に更新するためにcalculateを呼び出す。

end() - Method in class org.simBio.bio.terashima_et_al_2006.current.carrier.INaK

end() - Method in class org.simBio.bio.terashima_et_al_2006.experiment.VolumeRatio

Update the value at the end of calculation.

end() - Method in class org.simBio.bio.terashima_et_al_2006.function.TotalVolume

Update the value at the end of calculation.

end() - Method in class org.simBio.core.Component

called at the end of integration,
計算終了時に呼ばれます。

end() - Method in class org.simBio.core.Conductor

end of integration

end() - Method in class org.simBio.sim.analyzer.csv.CsvMaker

Close csv file.

end() - Method in class org.simBio.sim.analyzer.csv.keep.TimeSeriesKeeper

end() - Method in class org.simBio.sim.analyzer.csv.result.AbstractAppender

close csv file.

end() - Method in class org.simBio.sim.analyzer.graph.Graph

Called when the calculations finish, and makes adjustments to the X axis, if necessary.

end() - Method in class org.simBio.sim.analyzer.graph.Viewer

end() - Method in class org.simBio.sim.analyzer.measure.Amplitude

apply scaling factor and substract minimum from maximum.

end() - Method in class org.simBio.sim.analyzer.measure.AmplitudeInCycle

end() - Method in class org.simBio.sim.analyzer.StopWatch

end() - Method in class org.simBio.tools.remote.process.AbstractAfterProcess

end() - Method in class org.simBio.tools.remote.process.DefaultAfterProcess

end() - Method in class org.simBio.tools.remote.process.WorkerStatus

endCDATA() - Method in class org.simBio.serialize.xml.LogSax2

Logs the end of a CDATA section.

endDocument() - Method in class org.simBio.serialize.xml.LogSax2

Reports the end of the document.

endDTD() - Method in class org.simBio.serialize.xml.LogSax2

Logs the end of a DTD section.

endElement(String, String, String) - Method in class org.simBio.serialize.xml.LogSax2

Reports the end of an element.

endElement(String, String, String) - Method in class org.simBio.sim.ps.serialize.TocReader

endEntity(String) - Method in class org.simBio.serialize.xml.LogSax2

Logs the end of an entity.

endFix - Variable in class org.simBio.sim.analyzer.measure.LeadPotential

endPrefixMapping(String) - Method in class org.simBio.serialize.xml.LogSax2

Reports the end of a prefix-URI mapping.

EnOff - Class in org.simBio.util.taglets

Inline taglet for English languages.

EnOff() - Constructor for class org.simBio.util.taglets.EnOff

EnOn - Class in org.simBio.util.taglets

Inline taglet for English languages.

EnOn() - Constructor for class org.simBio.util.taglets.EnOn

Entry - Class in org.simBio

Entry for every main()

ep - Variable in class org.simBio.bio.faber_rudy_2000.current.Current

Euler - Class in org.simBio.core.integrator

the variable calculated by euler method
オイラー法で計算される変数

Euler() - Constructor for class org.simBio.core.integrator.Euler

EulerList - Class in org.simBio.core.integrator

include euler engine & dt adjuster

EulerList() - Constructor for class org.simBio.core.integrator.EulerList

evalPrefix - Variable in class org.simBio.sim.analyzer.csv.keep.ParamEvalKeeper

評価値名の頭に付ける親の名前の数

evals - Variable in class org.simBio.sim.ps.serialize.ParseXMLs.Result

evaluate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.contraction.CrossBridgeForce

evaluate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.contraction.ForceEquilibrium

evaluate(double) - Method in class org.simBio.bio.kuzumoto_et_al_2007.contraction.ParallelElementForce

evaluate(double[]) - Method in class org.simBio.util.numerical.MathMultivariableFunction

Evaluates this function at specified values.

evaluate(double) - Method in class org.simBio.util.numerical.MathUnivariableFunction

Evaluates this function at specified value.

exchange() - Method in class org.simBio.sim.dm.exchange.Exchanger

exchange() - Method in class org.simBio.sim.dm.exchange.FileNameExchanger

exchange() - Method in class org.simBio.sim.dm.exchange.IndexNameExchanger

exchange() - Method in class org.simBio.sim.dm.exchange.ListExchanger

exchange() - Method in class org.simBio.sim.dm.exchange.LogRatioExchanger

exchange() - Method in class org.simBio.sim.dm.exchange.NullExchanger

exchange() - Method in class org.simBio.sim.dm.exchange.NumericalExchanger

exchange() - Method in class org.simBio.sim.dm.exchange.SelectedValuesExchanger

exchange() - Method in class org.simBio.sim.dm.exchange.UniformRatioExchanger

exchange() - Method in class org.simBio.sim.dm.exchange.UniformValueExchanger

Exchanger - Class in org.simBio.sim.dm.exchange

値変換クラス群が継承する抽象クラス

Exchanger() - Constructor for class org.simBio.sim.dm.exchange.Exchanger

ExchangerFactory - Class in org.simBio.sim.dm.exchange

Exchangerの列を生成するファクトリ（？）クラス

ExchangerFactory(Document, Node, String) - Constructor for class org.simBio.sim.dm.exchange.ExchangerFactory

execute(String, Document, Document) - Static method in class org.simBio.JSEntry

exit() - Method in class org.simBio.core.Conductor

exit run() of this Thread.

exit() - Method in class org.simBio.sim.dm.ParameterChanger

exit() - Method in interface org.simBio.sim.ps.ICollector

全ての計算が終了したとき、データを保存する。

exit() - Method in interface org.simBio.sim.ps.IParamSpaceObserver

データの追加が終了したことを通知。

exit() - Method in interface org.simBio.sim.ps.IReciever

Finish one record of the result.

exit() - Method in class org.simBio.sim.ps.ParameterSpace

exit() - Method in class org.simBio.sim.ps.serialize.TocWriter

Close the XML file.

exit() - Method in class org.simBio.sim.ps.view.PlotLouncher

expandAll() - Method in class org.simBio.sim.gui.JTreeTableSimBio

TreeTableの階層全体を展開する。

extendMode - Variable in class org.simBio.sim.analyzer.graph.Axis

Action mode

extendModeDefault - Variable in class org.simBio.sim.analyzer.graph.Axis

Default action mode

extendRateDefault - Variable in class org.simBio.sim.analyzer.graph.Axis

When the calculation exceeds the range of the display, scroll or expand the range (standard value)

external - Variable in class org.simBio.bio.matsuoka_et_al_2004.molecule.Diffusion

external concentration

externalEntityDecl(String, String, String) - Method in class org.simBio.serialize.xml.LogSax2

Logs a parsed external entity declaration.