org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca
Class Analytic

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer
                      org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.Analytic

All Implemented Interfaces:

Node

public class Analytic
extends Buffer

instantaneous Ca buffer, using analytic equation as for Zeng et al, 1995 J. Zeng, K. R. Laurita, D. S. Rosenbaum, Y. Rudy, Two Components of the Delayed Rectifier K+ Current in Ventricular Myocytes of the Guinea Pig Type Theoretical Formulation and Their Role in Repolarization, Circulation Research. 1995;77:140-152. http://circres.ahajournals.org/cgi/content/abstract/77/1/140?ijkey=e93a018c45e7d0bfaf1ee5d9cbbbededc669ee45&keytype2=tf_ipsecsha
free Caを、解析式を使って求める。 Runge-Kuttaで計算するときは、freeをVariableとしておくと、 前回の計算サイクルの値を使うことが出来る。

Author:

Nobuaki Sarai

Field Summary

Node	Ca
double	Km

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer

free, total

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

Analytic()

Method Summary

protected void	calculate(double t) instantaneous equiribrium
protected void	end() 終了時にCaの値をバッファリングされた値に更新するためにcalculateを呼び出す。

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

Km

public double Km

Ca

public Node Ca

Constructor Detail

Analytic

public Analytic()

Method Detail

calculate

protected void calculate(double t)

instantaneous equiribrium

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)

end

protected void end()

終了時にCaの値をバッファリングされた値に更新するためにcalculateを呼び出す。

Overrides:

end in class Component

See Also:

Component.end()