A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

T

T - Variable in class org.simBio.bio.faber_rudy_2000.current.ICaL

T - Variable in class org.simBio.bio.faber_rudy_2000.current.IKs

T - Variable in class org.simBio.bio.faber_rudy_2000.current.INaCa

T - Variable in class org.simBio.bio.faber_rudy_2000.current.INaK

T - Variable in class org.simBio.bio.kurata_et_al_2005.current.ICab

T - Variable in class org.simBio.bio.kurata_et_al_2005.current.IK1

T - Variable in class org.simBio.bio.kurata_et_al_2005.current.IKr

T - Variable in class org.simBio.bio.kurata_et_al_2005.current.IKs

T - Variable in class org.simBio.bio.kurata_et_al_2005.current.INa

T - Variable in class org.simBio.bio.kurata_et_al_2005.current.INab

T - Variable in class org.simBio.bio.kurata_et_al_2005.current.INaCa

T - Variable in class org.simBio.bio.kurata_et_al_2005.current.INaK

T - Variable in class org.simBio.bio.kurata_et_al_2005.current.Ito

T - Variable in class org.simBio.bio.kuratomi_et_al_2003.current.carrier.INaCa

absolute temperature[K]

T - Variable in class org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponin

T - Variable in class org.simBio.bio.kuzumoto_et_al_2007.current.carrier.INaK

absolute temperature[K]

T - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaCa

absolute temperature[K]

T - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaK

absolute temperature[K]

T - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.ConstantField

the absolute temperature (K)

t - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Diffusion_t

T - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.ReversalPotential

the absolute temperature (K)

T - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.Zvalue

T - Variable in class org.simBio.bio.takeuchi_et_al_2006.current.INaCa

absolute temperature [K]

T - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.carrier.INaCa

T - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.carrier.INaK

T - Variable in class org.simBio.bio.tenTusscher_et_al_2004.current.ICa

T - Variable in class org.simBio.bio.tenTusscher_et_al_2004.function.ReversalPotential2

T - Variable in class org.simBio.bio.terashima_et_al_2006.function.Tonicity

extracellular fluid tonicity

t0 - Variable in class org.simBio.bio.kuzumoto_et_al_2007.function.Average

starting time

t0 - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.ICaPump

a starting time point for calculation of ATPconsumingRate

t0 - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.carrier.INaK

startTime of calculation

t0 - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL

t0 - Variable in class org.simBio.bio.negroni_lascano_1996.Qrel

t0 - Variable in class org.simBio.bio.sarai_et_al_2006.function.Rate

starting time

t1 - Variable in class org.simBio.bio.negroni_lascano_1996.Qrel

Taker - Class in org.simBio.sim.js

Count under processing.

Taker(JavaSpace, String, Entry, int) - Constructor for class org.simBio.sim.js.Taker

Taker(JavaSpace, String, Entry) - Constructor for class org.simBio.sim.js.Taker

target - Variable in class org.simBio.bio.function.StepChanger

target - Variable in class org.simBio.bio.kuzumoto_et_al_2007.function.Average

target to sum

target - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Diffusion

target - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Diffusion_a

target - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Diffusion_t

target - Variable in class org.simBio.bio.sarai_et_al_2006.function.Rate

target to sum

target - Variable in class org.simBio.sim.analyzer.graph.AbstractGraph

Nodes which become the drawing target (target X)

target - Variable in class org.simBio.sim.analyzer.measure.Amplitude

to analyze

target - Variable in class org.simBio.sim.analyzer.measure.AmplitudeInCycle

to analyze

target - Variable in class org.simBio.sim.analyzer.measure.Limitter

計測対象

target - Variable in class org.simBio.sim.analyzer.measure.PeakDetect

targetAttribute_ - Variable in class org.simBio.sim.dm.exchange.Exchanger

targetName - Variable in class org.simBio.sim.analyzer.graph.AbstractGraph

name of the Node which becomes the drawing target (page.Graph.target X)

targets_ - Variable in class org.simBio.sim.analyzer.csv.ALaCarte

記録対象となっているNodeのList

targets_ - Variable in class org.simBio.sim.analyzer.csv.keep.TimeSeriesKeeper

targets_ - Variable in class org.simBio.sim.analyzer.csv.result.ALaCarte

記録対象となっているNodeのList TODO graphコンポーネントと共通化する。

targetScale - Variable in class org.simBio.sim.analyzer.graph.AbstractGraph

scale of the Node which becomes the drawing target (target X scale)

targetShortName - Variable in class org.simBio.sim.analyzer.graph.AbstractGraph

short name of the Node which becomes the drawing target (target X)

tau - Variable in class org.simBio.bio.faber_rudy_2000.function.Diffusion

tau - Variable in class org.simBio.bio.kurata_et_al_2005.flux.Transfer

(ms)

tau - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Diffusion

tau - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Diffusion_a

tau - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Diffusion_t

TCa - Variable in class org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponin

TCa - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL

TCa - Variable in class org.simBio.bio.negroni_lascano_1996.exp.Model

TCa - Variable in class org.simBio.bio.negroni_lascano_1996.Troponin

TCaCB - Variable in class org.simBio.bio.kuzumoto_et_al_2007.contraction.CrossBridgeForce

TCaCB - Variable in class org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponin

TCaCB - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL

TCaCB - Variable in class org.simBio.bio.negroni_lascano_1996.CrossBridge

TCaCB - Variable in class org.simBio.bio.negroni_lascano_1996.exp.Model

TCaCB - Variable in class org.simBio.bio.negroni_lascano_1996.Troponin

TCB - Variable in class org.simBio.bio.kuzumoto_et_al_2007.contraction.CrossBridgeForce

TCB - Variable in class org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponin

TCB - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL

TCB - Variable in class org.simBio.bio.negroni_lascano_1996.CrossBridge

TCB - Variable in class org.simBio.bio.negroni_lascano_1996.exp.Model

TCB - Variable in class org.simBio.bio.negroni_lascano_1996.Troponin

Tchange - Variable in class org.simBio.bio.terashima_et_al_2006.experiment.TonicityChange

tonicity to change

Tension - Variable in class org.simBio.bio.noble_et_al_1998.Model

test - Variable in class org.simBio.bio.sarai_noma_2004.VoltageClamp

testPotential - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.pipette.VoltageClamp

designated potential for simulation

thisGraph - Variable in class org.simBio.sim.analyzer.graph.AbstractGraph

information for accessing this Graph from a subclass

threshold - Variable in class org.simBio.sim.analyzer.measure.APDforSA

活動電位と見なす閾値 (mV)

timeconstant - Variable in class org.simBio.bio.oka_et_al_2006.function.kinetics.RateConstantCaGate

time constant at a given pX (ms)

timeMax - Variable in class org.simBio.sim.analyzer.graph.results.TimeSeriesValues

timeMin - Variable in class org.simBio.sim.analyzer.graph.results.TimeSeriesValues

times - Variable in class org.simBio.bio.function.StepChanger

TimeSeriesKeeper - Class in org.simBio.sim.analyzer.csv.keep

Keep time series data and write to csv.

TimeSeriesKeeper() - Constructor for class org.simBio.sim.analyzer.csv.keep.TimeSeriesKeeper

TimeSeriesSingle - Class in org.simBio.sim.analyzer.graph.results

TimeSeriesValues の１系列をカプセル化するためのクラス.

TimeSeriesSingle(TimeSeriesValues, int, String, Component) - Constructor for class org.simBio.sim.analyzer.graph.results.TimeSeriesSingle

時系列をカプセル化する。

TimeSeriesValues - Class in org.simBio.sim.analyzer.graph.results

計算結果バッファ.

TimeSeriesValues(String) - Constructor for class org.simBio.sim.analyzer.graph.results.TimeSeriesValues

コンストラクタ データファイル名を元に、テンポラリファイル名を決定する。
"データファイル名" + 数字 + ".tmp"

timeStep - Variable in class org.simBio.bio.faber_rudy_2000.current.RyR

timeStep - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.pipette.VoltageClamp

time step for integral calculation

timeStep - Variable in class org.simBio.core.Conductor

time step of integration

TINY - Static variable in interface org.simBio.core.Variable

現在値がこれ以下なら、dy/dt over yを0とする。

title - Variable in class org.simBio.sim.analyzer.graph.plot.AbstractPlot

titleColor - Variable in class org.simBio.sim.analyzer.graph.Axis

title colour

titleFont - Variable in class org.simBio.sim.analyzer.graph.Axis

title font

titleVersion - Static variable in class org.simBio.sim.gui.Constant

the version of the simBio, which should be the same as in build.xml.

TocParser - Class in org.simBio.sim.ps.serialize

Write a table of contents in a XML.

TocParser(String) - Constructor for class org.simBio.sim.ps.serialize.TocParser

TocReader - Class in org.simBio.sim.ps.serialize

Writerで書き出したXMLをParameterSpaceに読み込ませる。

TocReader(ICollector) - Constructor for class org.simBio.sim.ps.serialize.TocReader

TocWriter - Class in org.simBio.sim.ps.serialize

ParameterSpaceにある結果データをXML形式で書き出す。 TODO dmと共通化する？

TocWriter(String) - Constructor for class org.simBio.sim.ps.serialize.TocWriter

Tonicity - Class in org.simBio.bio.terashima_et_al_2006.function

Tonicity of extracellular fluid .

Tonicity() - Constructor for class org.simBio.bio.terashima_et_al_2006.function.Tonicity

TonicityChange - Class in org.simBio.bio.terashima_et_al_2006.experiment

Change extracellular fluid tonicity

TonicityChange() - Constructor for class org.simBio.bio.terashima_et_al_2006.experiment.TonicityChange

ToolBarMente - Class in org.simBio.sim.gui.toolKit.dndmenu

Drag&Dropツールバーのメンテナンスを行う.

ToolBarMente(JFrame, String) - Constructor for class org.simBio.sim.gui.toolKit.dndmenu.ToolBarMente

This is the default constructor

toolBarPropertyFile - Static variable in class org.simBio.sim.gui.Constant

ツールバープロパティファイル名（ホームディレクトリ上）

toString() - Method in class org.simBio.sim.gui.toolKit.dndmenu.DnDAction

見出し文字列を文字列表現として得る JList に表示する際に、JListModel に DnDAction を格納した時、見出し文字列が表示されるように、 toString() をオーバーライドしました。

toString() - Method in class org.simBio.sim.js.entry.Canceled

toString() - Method in class org.simBio.sim.js.entry.Index

toString() - Method in class org.simBio.sim.js.entry.Processing

toString() - Method in class org.simBio.sim.js.entry.Receipt

toString(Tag) - Method in class org.simBio.util.taglets.EnOff

Given the Tag representation of this custom tag, return its string representation.

toString(Tag) - Method in class org.simBio.util.taglets.EnOn

Given the Tag representation of this custom tag, return its string representation.

toString(Tag) - Method in class org.simBio.util.taglets.JaOff

Given the Tag representation of this custom tag, return its string representation.

toString(Tag) - Method in class org.simBio.util.taglets.JaOn

Given the Tag representation of this custom tag, return its string representation.

toString(Tag) - Method in class org.simBio.util.taglets.Languages

Given the Tag representation of this custom tag, return its string representation.

total - Variable in class org.simBio.bio.faber_rudy_2000.molecule.CaBuffer

total - Variable in class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

total - Variable in class org.simBio.bio.matsuoka_et_al_2003.function.Volume

total value

total - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer

Total concentration (mM)

total - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationCyta2

total concentration of cytochrome a

total - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.MassConservation

total concentration

total - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.MassConservation2

total concentration

total - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.MetalFreeConcentration

total concentration

total - Variable in class org.simBio.bio.matsuoka_et_al_2004.function.PartialPotential

membrane potential

total - Variable in class org.simBio.bio.terashima_et_al_2006.function.Volume

total value

Total - Class in org.simBio.sim.analyzer.csv

writes values of all parameters, variables and nodes to csv file
親Reactor以下のTreeに存在する全てのReactorとParameterの値をcsv fileに書き出す

Total() - Constructor for class org.simBio.sim.analyzer.csv.Total

TotalAdenosine - Variable in class org.simBio.bio.kuzumoto_et_al_2007.function.ConcentrationAMP

total adenosine concentration

totalAdenosine - Variable in class org.simBio.bio.matsuoka_et_al_2003.complex.ATPsynthesis

total adenosine concentration (= [ATP] + [ADP]) (mM).

totalanion - Variable in class org.simBio.bio.takeuchi_et_al_2006.function.Electroneutrality

amount of intracellular total anions [pEq]

totalcation - Variable in class org.simBio.bio.takeuchi_et_al_2006.function.Electroneutrality

amount of intracellular total cations [pEq]

TotalIonext - Variable in class org.simBio.bio.terashima_et_al_2006.complex.WaterFlux

sum of extracellular ionic concentration [mM]

TotalIonint - Variable in class org.simBio.bio.terashima_et_al_2006.complex.WaterFlux

sum of intracellular ionic concentration [mM]

totalTime - Variable in class org.simBio.sim.analyzer.StopWatch

TotalVolume - Class in org.simBio.bio.terashima_et_al_2006.function

Calculate total cell volume from cell volume accessible for ion diffusion.

TotalVolume() - Constructor for class org.simBio.bio.terashima_et_al_2006.function.TotalVolume

trans - Variable in class org.simBio.bio.faber_rudy_2000.structure.JSR

trans - Variable in class org.simBio.bio.faber_rudy_2000.structure.NSR

Transfer - Variable in class org.simBio.bio.kurata_et_al_2005.complex.SR

Transfer - Class in org.simBio.bio.kurata_et_al_2005.flux

Transfer() - Constructor for class org.simBio.bio.kurata_et_al_2005.flux.Transfer

Troponin - Class in org.simBio.bio.kuzumoto_et_al_2007.contraction

troponin of Negroni and Lascano contraction model.

Troponin() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponin

troponin - Variable in class org.simBio.bio.matsuoka_et_al_2003.molecule.enzyme.CrossBridgeNL

Troponin - Class in org.simBio.bio.negroni_lascano_1996

Troponin state transition of Cardiac Muscle Model by Negroni and Lascano.

Troponin() - Constructor for class org.simBio.bio.negroni_lascano_1996.Troponin

Troponinmit - Class in org.simBio.bio.kuzumoto_et_al_2007.contraction

Troponin state transition of Cardiac Muscle Model by Negroni and Lascano.

Troponinmit() - Constructor for class org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponinmit

TroponinNL - Class in org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca

Troponin state transition of Cardiac Muscle Model by Negroni and Lascano.

TroponinNL() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL

TroponinNL_RK - Class in org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca

Troponin state transition of Negroni and Lascano contraction model for Runge-Kutta.

TroponinNL_RK() - Constructor for class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL_RK

TroponinNL_RK - Class in org.simBio.bio.matsuoka_et_al_2004.molecule.buffer.Ca

Troponin of Negroni and Lascano contraction model.

TroponinNL_RK() - Constructor for class org.simBio.bio.matsuoka_et_al_2004.molecule.buffer.Ca.TroponinNL_RK

trpnbar - Variable in class org.simBio.bio.faber_rudy_2000.molecule.DualCaBuffer

TRUE - Static variable in class org.simBio.tools.remote.RemoteConstant

汎用フラグ TRUE TRUE/FALSE value "1"

Tt - Variable in class org.simBio.bio.kuzumoto_et_al_2007.contraction.Troponin

Tt - Variable in class org.simBio.bio.negroni_lascano_1996.exp.Model

TwoStateModel - Class in org.simBio.bio.oka_et_al_2006.function.kinetics

Two-state model.

TwoStateModel() - Constructor for class org.simBio.bio.oka_et_al_2006.function.kinetics.TwoStateModel

type - Variable in class org.simBio.sim.js.entry.Index

head or tail

TYPE_NAME - Static variable in class org.simBio.sim.dm.exchange.FileNameExchanger

TYPE_NAME - Static variable in class org.simBio.sim.dm.exchange.IndexNameExchanger

TYPE_NAME - Static variable in class org.simBio.sim.dm.exchange.ListExchanger

TYPE_NAME - Static variable in class org.simBio.sim.dm.exchange.NullExchanger

TYPE_NAME - Static variable in class org.simBio.sim.dm.exchange.OneTimeListExchanger

TYPE_NAME - Static variable in class org.simBio.sim.dm.exchange.UniformRatioExchanger

TYPE_NAME - Static variable in class org.simBio.sim.dm.exchange.UniformValueExchanger