org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca
Class TroponinNL_RK

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer
                      org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL
                          org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL_RK

All Implemented Interfaces:

Node

Direct Known Subclasses:

TroponinNL_RK

public class TroponinNL_RK
extends TroponinNL

Troponin state transition of Negroni and Lascano contraction model for Runge-Kutta.

Version:

$Log: TroponinNL_RK.java,v $ Revision 1.1 2005/11/01 06:32:40 mikaelwing First version of simBio hosted on sourceforge, version 0.3 Revision 1.1 2005/09/12 04:57:32 sarai rearrenge folder structure as a Maven style Revision 1.4 2005/08/29 02:01:22 sarai revised javadoc
2005/02/22 10:29:10 Some comments are added.
2004/09/17 05:21:24 delete dupricated portion.
2004/7/24 calculate ATP consumption.

Author:

Nobuaki Sarai

See Also:

Negroni JA and Lascano EC, 1996.
XML example
explanation (WORD doc)

Field Summary

Node	CaTotal total Ca concentration

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL

alfa1, alfa2, alfa3, alfa4, alfa5, ATP, ATPconsumingRate, ATPconsumption, beta1, beta2, beta3, bias, Ca, Cai, crossBridge, dATP, pCa, pCaCB, pCB, Q1, Q2, Q3, Q4, Q5, t0, TCa, TCaCB, TCB

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer

free, total

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

TroponinNL_RK()

Method Summary

protected void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.TroponinNL

getCBbound, prepare

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

CaTotal

public Node CaTotal

total Ca concentration

Constructor Detail

TroponinNL_RK

public TroponinNL_RK()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Overrides:

calculate in class TroponinNL

Parameters:

t - elapsed time (ms)