org.simBio.bio.matsuoka_et_al_2004.current.carrier
Class ICaPump

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter
                      org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier
                          org.simBio.bio.matsuoka_et_al_2003.current.carrier.ICaPump
                              org.simBio.bio.matsuoka_et_al_2004.current.carrier.ICaPump

All Implemented Interfaces:

Node

public class ICaPump
extends ICaPump

Ca pump on network SR. Differential equation of ADP production is incorporated.

Since:

rc20

Version:

$Log: ICaPump.java,v $ Revision 1.1 2005/11/01 06:32:40 mikaelwing First version of simBio hosted on sourceforge, version 0.3 Revision 1.1 2005/09/12 04:57:39 sarai rearrenge folder structure as a Maven style Revision 1.2 2005/08/04 08:43:04 sarai revise Javadoc to suppress Warnings
2004/12/17 05:43:03 update
2004/09/22 06:41:39 Created.

Author:

SAITO Ryuta

Field Summary

Node

ADP

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.carrier.ICaPump

ATP, ATPconsumingRate, ATPconsumption, Cai, Cao, dATP, F, KmATP, KmCaCp, KmCaSR, t0, Vi

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.carrier.Carrier

amplitude, Cm, E1A, E1B, E2A, E2B, gate, k1, k2, k3, k4, stoichiometryCa, stoichiometryK, stoichiometryNa

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter

cCa, CCa, cK, CK, cNa, CNa, current, currentCa, currentK, currentNa, total

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

ICaPump()

Method Summary

protected void

calculate(double t) calculate total charge movement using reduced 2 state model 2 state gateを用いて電流を計算する

Methods inherited from class org.simBio.bio.matsuoka_et_al_2003.current.carrier.ICaPump

prepare

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

ADP

public Node ADP

Constructor Detail

ICaPump

public ICaPump()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Carrier

calculate total charge movement using reduced 2 state model
2 state gateを用いて電流を計算する

Overrides:

calculate in class ICaPump

Parameters:

t - time