org.simBio.bio.kuzumoto_et_al_2007.function
Class PA2MS

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.kuzumoto_et_al_2007.function.Average
                      org.simBio.bio.kuzumoto_et_al_2007.function.PA2MS

All Implemented Interfaces:

Node

public class PA2MS
extends Average

Average and Convert pA to M/S.

Version:

$Id: PA2MS.java,v 1.1 2007/12/15 07:21:54 nsarai Exp $

Author:

Sarai

Field Summary

double	F Faraday Constant (Coulomb/mM)
double	valence ion valence
Node	Vi internal volume (um^3)

Fields inherited from class org.simBio.bio.kuzumoto_et_al_2007.function.Average

converter, cycle, sum, t0, target

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

PA2MS()

Method Summary

protected void	calculate(double t) write equations here, and calculate dy over dt.
protected void	prepare() 親が自分と同じ名前のpublic doubleを持っていれば、自分の値を設定する。

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

Vi

public Node Vi

internal volume (um^3)

valence

public double valence

ion valence

F

public double F

Faraday Constant (Coulomb/mM)

Constructor Detail

PA2MS

public PA2MS()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Overrides:

calculate in class Average

Parameters:

t - elapsed time (ms)

prepare

protected void prepare()

Description copied from class: Parameter

親が自分と同じ名前のpublic doubleを持っていれば、自分の値を設定する。

Overrides:

prepare in class Average

See Also:

Component.prepare()