org.simBio.bio.terashima_et_al_2006.current
Class Diffusion

java.lang.Object
  extended by org.simBio.core.Component
      extended by org.simBio.core.Parameter
          extended by org.simBio.core.Composite
              extended by org.simBio.core.Reactor
                  extended by org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter
                      extended by org.simBio.bio.terashima_et_al_2006.current.MembraneTransporter
                          extended by org.simBio.bio.terashima_et_al_2006.current.Diffusion
All Implemented Interfaces:
Node

public class Diffusion
extends MembraneTransporter

Calculate current component of K, Na & Ca ion according to the diffusion.

Since:
rc20
Version:
$Revision: 1.1 $
Author:
Nobuaki Sarai, modified by B.J. KIM
See Also:
Diffusion

Field Summary
 Node Cai
          concentration of intracellular Ca2+ [mM]
 Node Cao
          concentration of extracellular Ca2+ [mM]
 Node Cli
          concentration of intracellular Cl- [mM]
 Node Clo
          concentration of extracellular Cl- [mM]
 double Cm
          membrane capacitance [pF]
 Node Ki
          concentration of intracellular K+ [mM]
 Node Ko
          concentration of extracellular K+ [mM]
 Node Nai
          concentration of intracellular Na+ [mM]
 Node Nao
          concentration of extracellular Na+ [mM]
 double permeabilityCa
          membrane permeability for Ca2+
 double permeabilityCl
          membrane permeability for Cl-
 double permeabilityK
          membrane permeability for K+
 double permeabilityNa
          membrane permeability for Na+
 
Fields inherited from class org.simBio.bio.terashima_et_al_2006.current.MembraneTransporter
cCl, CCl, currentCl
 
Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter
cCa, CCa, cK, CK, cNa, CNa, current, currentCa, currentK, currentNa, total
 
Fields inherited from class org.simBio.core.Parameter
value
 
Constructor Summary
Diffusion()
           
 
Method Summary
protected  void calculate(double dt)
          current = permeability * concentration gradient (in - out)
 
Methods inherited from class org.simBio.bio.matsuoka_et_al_2003.current.MembraneTransporter
prepare
 
Methods inherited from class org.simBio.core.Composite
accept, getLink, getNode, getNodesIterator, getNodesSize
 
Methods inherited from class org.simBio.core.Parameter
addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField
 
Methods inherited from class org.simBio.core.Component
addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface org.simBio.core.Node
addDydt, addValue, getValue, setValue
 

Field Detail

Nai

public Node Nai
concentration of intracellular Na+ [mM]


Nao

public Node Nao
concentration of extracellular Na+ [mM]


Ki

public Node Ki
concentration of intracellular K+ [mM]


Ko

public Node Ko
concentration of extracellular K+ [mM]


Cai

public Node Cai
concentration of intracellular Ca2+ [mM]


Cao

public Node Cao
concentration of extracellular Ca2+ [mM]


Cli

public Node Cli
concentration of intracellular Cl- [mM]


Clo

public Node Clo
concentration of extracellular Cl- [mM]


permeabilityNa

public double permeabilityNa
membrane permeability for Na+


permeabilityK

public double permeabilityK
membrane permeability for K+


permeabilityCa

public double permeabilityCa
membrane permeability for Ca2+


permeabilityCl

public double permeabilityCl
membrane permeability for Cl-


Cm

public double Cm
membrane capacitance [pF]

Constructor Detail

Diffusion

public Diffusion()
Method Detail

calculate

protected void calculate(double dt)
current = permeability * concentration gradient (in - out)

Overrides:
calculate in class MembraneTransporter
Parameters:
dt - time


Copyright © 2002-2008 Cell/Biodinamics simulation project. All Rights Reserved.