org.simBio.bio.oka_et_al_2006.structure
Class GapJunctionK

java.lang.Object
  extended by org.simBio.core.Component
      extended by org.simBio.core.Parameter
          extended by org.simBio.core.Composite
              extended by org.simBio.core.Reactor
                  extended by org.simBio.bio.Compartment
                      extended by org.simBio.bio.oka_et_al_2006.structure.GapJunction
                          extended by org.simBio.bio.oka_et_al_2006.structure.GapJunctionK
All Implemented Interfaces:
Node

public class GapJunctionK
extends GapJunction

Gap junction model. It is assumed that the current is carried by K+ via gap junctions between connected cells.

Version:
$Revision: 1.1 $
Author:
Chiaki Oka
See Also:
GapJunction.ja.doc (Japanese, WORD doc)

Field Summary
 double F
          Faraday constant, default value = 96.4867
 Node Ki1
          intracellular K+ concentration of cell #1 (mM)
 Node Ki2
          intracellular K+ concentration of cell #2 (mM)
 Node volume1
          cell volume of cell #1 (um3)
 Node volume2
          cell volume of cell #2 (um3)
 double z
          valence, default value = 1.0
 
Fields inherited from class org.simBio.bio.oka_et_al_2006.structure.GapJunction
Cm1, Cm2, conductance, Vm1, Vm2
 
Fields inherited from class org.simBio.core.Parameter
value
 
Constructor Summary
GapJunctionK()
           
 
Method Summary
protected  void calculate(double t)
          Calculate the gap junctional current (pA)
protected  void prepare()
          親が自分と同じ名前のpublic doubleを持っていれば、自分の値を設定する。
 
Methods inherited from class org.simBio.core.Composite
accept, getLink, getNode, getNodesIterator, getNodesSize
 
Methods inherited from class org.simBio.core.Parameter
addValue, getValue, getValueString, setInitializer, setValue, setValueString, setValueToField
 
Methods inherited from class org.simBio.core.Component
addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface org.simBio.core.Node
addDydt, addValue, getValue, setValue
 

Field Detail

volume1

public Node volume1
cell volume of cell #1 (um3)


volume2

public Node volume2
cell volume of cell #2 (um3)


Ki1

public Node Ki1
intracellular K+ concentration of cell #1 (mM)


Ki2

public Node Ki2
intracellular K+ concentration of cell #2 (mM)


F

public double F
Faraday constant, default value = 96.4867


z

public double z
valence, default value = 1.0

Constructor Detail

GapJunctionK

public GapJunctionK()
Method Detail

calculate

protected void calculate(double t)
Description copied from class: GapJunction
Calculate the gap junctional current (pA)

Overrides:
calculate in class GapJunction
Parameters:
t - time
See Also:
Reactor.calculate(double)

prepare

protected void prepare()
Description copied from class: Parameter
親が自分と同じ名前のpublic doubleを持っていれば、自分の値を設定する。

Overrides:
prepare in class Parameter
See Also:
Component.prepare()


Copyright © 2002-2008 Cell/Biodinamics simulation project. All Rights Reserved.