org.simBio.bio.matsuoka_et_al_2004.function
Class ConcentrationAMP

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2004.function.MassConservation2
                      org.simBio.bio.matsuoka_et_al_2004.function.ConcentrationAMP

All Implemented Interfaces:

Node

public class ConcentrationAMP
extends MassConservation2

calculation of AMP concentration (conformed to mass conservation law)

  [Adenosine]total_cell = [ATP]cell + [ADP]cell + [AMP]
  [AMP] = [Adenosine]total_cell - [ATP]cell - [ADP]cell
 

Since:

rc20

Version:

$Log: ConcentrationAMP.java,v $ Revision 1.1 2005/11/01 06:32:39 mikaelwing First version of simBio hosted on sourceforge, version 0.3 Revision 1.1 2005/09/12 04:57:24 sarai rearrenge folder structure as a Maven style Revision 1.2 2005/08/04 08:43:04 sarai revise Javadoc to suppress Warnings
2005/02/01 08:51:20 Some comments were updated to make Javadoc.
2004/12/17 05:43:03 update
2004/09/16 10:32:07 Created

Author:

SAITO Ryuta

See Also:

Matsuoka et al. (2004) Korzeniewski & Zoladz (2001)
ConcentrationAMP XML example explanation (Japanese, WORD doc)

Field Summary

Node	AdenosineTotal
Node	ADPtcell
Node	ATPtcell

Fields inherited from class org.simBio.bio.matsuoka_et_al_2004.function.MassConservation2

other1, other2, total

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

ConcentrationAMP()

Method Summary

protected void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

AdenosineTotal

public Node AdenosineTotal

ATPtcell

public Node ATPtcell

ADPtcell

public Node ADPtcell

Constructor Detail

ConcentrationAMP

public ConcentrationAMP()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Overrides:

calculate in class MassConservation2

Parameters:

t - elapsed time (ms)