org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca
Class Analytic_RK

java.lang.Object
  org.simBio.core.Component
      org.simBio.core.Parameter
          org.simBio.core.Composite
              org.simBio.core.Reactor
                  org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer
                      org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Ca.Analytic_RK

All Implemented Interfaces:

Node

public class Analytic_RK
extends Buffer

instantaneous Ca buffer using analytic equation as for Zeng et al, 1995. has a value of [buffer-Ca].

Version:

$Id: Analytic_RK.java,v 1.5 2007/10/15 08:45:51 nsarai Exp $

Author:

Nobuaki Sarai, Kim

See Also:

Zeng et al, 1995
XML example
explanation (Japanese, WORD doc)

Field Summary

Node	Ca free calcium concentration (mM)
Node	CaTotal total calcium concentration (free calcium + buffered calcium + influx/efflux calcium) (mM)
double	Km buffering kinetics (mM)

Fields inherited from class org.simBio.bio.matsuoka_et_al_2003.molecule.buffer.Buffer

free, total

Fields inherited from class org.simBio.core.Parameter

value

Constructor Summary

Analytic_RK()

Method Summary

protected void

calculate(double t) write equations here, and calculate dy over dt.

Methods inherited from class org.simBio.core.Composite

accept, getLink, getNode, getNodesIterator, getNodesSize

Methods inherited from class org.simBio.core.Parameter

addValue, getValue, getValueString, prepare, setInitializer, setValue, setValueString, setValueToField

Methods inherited from class org.simBio.core.Component

addDydt, end, getIndent, getIndentedShortName, getName, getName, getParent, getRoot, getShortName, getUnits, isNamed, isPrefixed, logIndented, quit, setLinks

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.simBio.core.Node

addDydt, addValue, getValue, setValue

Field Detail

Km

public double Km

buffering kinetics (mM)

Ca

public Node Ca

free calcium concentration (mM)

CaTotal

public Node CaTotal

total calcium concentration (free calcium + buffered calcium + influx/efflux calcium) (mM)

Constructor Detail

Analytic_RK

public Analytic_RK()

Method Detail

calculate

protected void calculate(double t)

Description copied from class: Reactor

write equations here, and calculate dy over dt.
計算中に呼び出される。 計算式を記載する。dy/dtをここで計算する。

Specified by:

calculate in class Reactor

Parameters:

t - elapsed time (ms)